Transcriptomics profiling of singleton and twin placentas in the absence or presence of preeclampsia.
RNA-seq (gene expression) · human · 45 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 45 samples: 45 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE272342_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1136485 and SRA study SRP520239. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 45 sample titles: 45 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8398779 S PE, S06, Villous Tissue
- GSM8398780 S PE, S18, Villous Tissue
- GSM8398781 S PE, S20, Villous Tissue
- GSM8398782 S PE, 31, Villous Tissue
- GSM8398783 S PE, 32, Villous Tissue
- GSM8398784 S PE, 33, Villous Tissue
- GSM8398785 S PE, 34, Villous Tissue
- GSM8398786 S PE, 35, Villous Tissue
- GSM8398787 S PE, 36, Villous Tissue
- GSM8398788 S PE, 37, Villous Tissue
- GSM8398789 S PE, 38, Villous Tissue
- GSM8398790 S PE, 39, Villous Tissue
- GSM8398791 S PE, 40, Villous Tissue
- GSM8398792 D PE, 1A, Villous Tissue
- GSM8398793 D PE, 1B, Villous Tissue
- GSM8398794 M PE, 2A1, Villous Tissue
- GSM8398795 M PE, 2A2, Villous Tissue
- GSM8398796 D PE, 3A, Villous Tissue
- GSM8398797 D PE, 3B, Villous Tissue
- GSM8398798 D PE, 4A, Villous Tissue
- GSM8398799 D PE, 4B, Villous Tissue
- GSM8398800 D No PE, 5A, Villous Tissue
- GSM8398801 D No PE, 5B, Villous Tissue
- GSM8398802 D No PE, 6A, Villous Tissue
- GSM8398803 D No PE, 6B, Villous Tissue
- GSM8398804 D No PE, 7A, Villous Tissue
- GSM8398805 D No PE, 7B, Villous Tissue
- GSM8398806 D No PE, 8A, Villous Tissue
- GSM8398807 D No PE, 8B, Villous Tissue
- GSM8398808 D PE, 9A, Villous Tissue
- GSM8398809 D PE, 9B, Villous Tissue
- GSM8398810 D No PE, 10A, Villous Tissue
- GSM8398811 D No PE, 10B, Villous Tissue
- GSM8398812 D No PE, 11A, Villous Tissue
- GSM8398813 D No PE, 11B, Villous Tissue
- GSM8398814 M No PE, 12A1, Villous Tissue
- GSM8398815 M No PE, 12A2, Villous Tissue
- GSM8398816 M PE, 13A1, Villous Tissue
- GSM8398817 M PE, 13A2, Villous Tissue
- GSM8398818 D PE, 14A, Villous Tissue
+ 5 more — browse all 45 samples with per-sample file links →
- GSE305998 mRNA expression profiles of human iPSC-derived sensory neurons treated with paclitaxel, vincristine, bortezomib or cisplatin in the presence and absence of SP600125 48 samples shares presence, absence
- GSE281957 Effects of overexpression of GFP-TDP-43, GFP-TDP-43(86-414) or GFP in human H4 cells, in the presence or absence of the EIF2B activator DNL343. 47 samples shares presence, absence
- GSE146579 Genome wide expression analysis of high passage growth arrested BJ fibroblasts maintained or withdrawn from rapamycin maintenance, in the presence or absence of various SMAD2/3 regulating molecules 24 samples shares presence, absence
- GSE281958 Effects of overexpression of a C9orf72 repeat expansion linked to GFP, or a GFP control in human HEK293 cells, in the presence or absence of the EIF2B activator DNL343. 23 samples shares presence, absence
- GSE298989 Transcriptomic Changes in THP-1 Macrophages Infected with Candida albicans SC5314 in the Presence or Absence of Cinnamaldehyde 18 samples shares presence, absence
- GSE280019 Human Primary Airway Epithelium Response to HCoV-229E Infection in the Presence and Absence of Human Macrophages 16 samples shares presence, absence
- GSE248292 RNAseq of CONTROL engineered and SMAD4 engineered Purified NK cells after 7 day treatment in the presence/absence of TGFb 12 samples shares presence, absence
- GSE266553 HOXB13 expression in T47D cells in presence/absence of estradiol 12 samples shares presence, absence
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.