In vivo Spatial Perturb-Seq in the mouse brain
mouse · 3 samples
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples: 2 × MouseGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
- Paper
- Spatial perturb-seq: single-cell functional genomics within intact tissue architectureNature communications · 2026
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE274447_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA1146440. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 2 samples.
How we read this: 1 replicated groups read from 3 sample titles; they account for 2 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8449354 Mouse 1 (2 sections)
- GSM9659883 Mouse 2 Mouse
- GSM9659884 Mouse 3 Mouse
- GSE269543 Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome] 4 samples shares spatial, brain
- GSE284202 Spatial transcriptomics and CUT&RUN of the aging mouse brain reveal origins of inflammation in the white matter 70 samples shares spatial, brain
- GSE233983 Spatial transcriptomics of the aging mouse brain reveals origins of inflammation in the white matter 44 samples shares spatial, brain
- GSE249405 Spatial mapping of RNA turnover kinetics in the mouse brain 38 samples shares spatial, brain
- GSE249403 Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq] 20 samples shares spatial, brain
- GSE319820 Efficient in vivo pharmacological inhibition of ∆FOSB with YL-0441 in brain 38 samples shares brain, vivo
- GSE305453 Perturb-seq uncovers pathological obstacles to direct cardiac reprogramming in vivo 15 samples shares perturb-seq, vivo
- GSE252772 Spatial characterization of sex differential regulations in kidney across lifespan 88 samples shares spatial
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.