A ONECUT1 regulatory, non-coding region in pancreatic development and diabetes [RNA-seq]
RNA-seq (gene expression) · human · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 24 samples: 24 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A ONECUT1 regulatory, non-coding region in pancreatic development and diabetesCell reports · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE275368_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1150554 and SRA study SRP527854. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 24 sample titles: 24 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8475643 WT_PP_rep1 (RNAseq)
- GSM8475644 WT_PP_rep2 (RNAseq)
- GSM8475645 WT_PP_rep3 (RNAseq)
- GSM8475646 ONECUT1het_PP_rep1 (RNAseq)
- GSM8475647 ONECUT1het_PP_rep2 (RNAseq)
- GSM8475648 ONECUT1het_PP_rep3 (RNAseq)
- GSM8475649 ONECUT1het_PP_rep4 (RNAseq)
- GSM8475650 ONECUT1hom_PP_rep1 (RNAseq)
- GSM8475651 ONECUT1hom_PP_rep2 (RNAseq)
- GSM8475652 ONECUT1hom_PP_rep3 (RNAseq)
- GSM8475653 Pat1-del-het_PP_rep1 (RNAseq)
- GSM8475654 Pat1-del-het_PP_rep2 (RNAseq)
- GSM8475655 Pat1-del-het_PP_rep3 (RNAseq)
- GSM8475656 Pat1-del-het_PP_rep4 (RNAseq)
- GSM8475657 Pat1-del-hom_PP_rep1 (RNAseq)
- GSM8475658 Pat1-del-hom_PP_rep2 (RNAseq)
- GSM8475659 Pat1-del-hom_PP_rep3 (RNAseq)
- GSM8475660 ONECUT1het/Pat1-del-het_cis_PP_rep1 (RNAseq)
- GSM8475661 ONECUT1het/Pat1-del-het_cis_PP_rep2 (RNAseq)
- GSM8475662 ONECUT1het/Pat1-del-het_cis_PP_rep3 (RNAseq)
- GSM8475663 ONECUT1het/Pat1-del-het_cis_PP_rep4 (RNAseq)
- GSM8475664 ONECUT1het/Pat1-del-het_trans_PP_rep1 (RNAseq)
- GSM8475665 ONECUT1het/Pat1-del-het_trans_PP_rep2 (RNAseq)
- GSM8475666 ONECUT1het/Pat1-del-het_trans_PP_rep3 (RNAseq)
- GSE208732 Mapping functional to morphological variation reveals the basis of regional extracellular matrix subversion and nerve invasion in pancreatic cancer [RNA-seq] 102 samples shares pancreatic, rna-seq, region
- GSE205154 Bulk RNA-Seq gene expression data for 289 primary and metastatic pancreatic ductal adenocarcinoma (PDAC) tumor samples from FFPE blocks. 289 samples shares pancreatic, rna-seq
- GSE278112 Regulation of pancreatic cancer migration by signal convergence in the epigenome [RNA-Seq] 36 samples shares pancreatic, rna-seq
- GSE330683 Mitophagy Competent Cancer Associated Fibroblasts fuel Chemoresistance by Rewiring Pyrimidine Metabolism in Pancreatic Cancer [RNA-Seq] 18 samples shares pancreatic, rna-seq
- GSE341753 Cohesin loading at regulatory elements shapes 3D genome folding during erythropoiesis [RNA-Seq] 12 samples shares regulatory, rna-seq
- GSE299831 KOLF2.1J iTF-Microglia: A standardized platform to study microglial transcriptional regulatory networks in CNS disease [RNA-seq] 12 samples shares regulatory, rna-seq
- GSE276133 Integrative epigenomic profiling of hepatocellular carcinoma uncovers aberrant cis-regulatory changes and potential prognostic indicators [RNA-seq] 10 samples shares regulatory, rna-seq
- GSE293843 Targeting the ferritinophagy-lysosome axis as a therapeutic vulnerability in gastroenteropancreatic neuroendocrine tumors [RNA-Seq] 10 samples shares pancreatic, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.