EBNA Leader Protein is required to reshape chromatin architecture during B cell transformation by Epstein-Barr Virus
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 62 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 62 samples: 50 distinct titles, 10 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- EBNA leader protein orchestrates chromatin architecture remodeling during Epstein-Barr virus-induced B cell transformationNucleic acids research · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE276491_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1157452 and SRA study SRP530781. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 62 sample titles: 50 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8499388 LCL, Donor 1301, KO
- GSM8499389 LCL, Donor 1301, WT
- GSM8499390 LCL, Donor 1362, KO
- GSM8499391 LCL, Donor 1362, WT
- GSM8499392 Donor 1301, KO, H3K27ac
- GSM8499393 Donor 1301, KO, Input
- GSM8499394 Donor 1301, KO, YY1
- GSM8499395 Donor 1301, WT, H3K27ac
- GSM8499396 Donor 1301, WT, Input
- GSM8499397 Donor 1301, WT, YY1
- GSM8499398 Donor 1362, KO, H3K27ac
- GSM8499399 Donor 1362, KO, Input
- GSM8499400 Donor 1362, KO, YY1
- GSM8499401 Donor 1362, WT, H3K27ac
- GSM8499402 Donor 1362, WT, Input
- GSM8499403 Donor 1362, WT, YY1
- GSM8499404 Donor 1301, KO, Pol2
- GSM8499405 Donor 1301, WT, Pol2
- GSM8499406 Donor 1362, KO, Pol2
- GSM8499407 Donor 1362, WT, Pol2
- GSM8499408 LCL, Input, rep1
- GSM8499409 LCL, Input, rep2
- GSM8499410 LCL, YY1, rep1
- GSM8499411 LCL, YY1, rep2
- GSM8499412 Mutu1, Input, rep1
- GSM8499413 Mutu1, Input, rep2
- GSM8499414 Mutu1, YY1, rep1
- GSM8499415 Mutu1, YY1, rep2
- GSM8499416 Donor1, LCL, H3K27ac
- GSM8499417 Donor1, LCL, YY1
- GSM8499418 Donor1, T0, H3K27ac
- GSM8499419 Donor1, T0, YY1
- GSM8499420 Donor2, LCL, H3K27ac
- GSM8499421 Donor2, LCL, YY1
- GSM8499422 Donor2, T0, H3K27ac
- GSM8499423 Donor2, T0, YY1
- GSM8499424 Donor 1301, KO, CTCF
- GSM8499425 Donor 1301, WT, CTCF
- GSM8499426 Donor 1362, KO, CTCF
- GSM8499427 Donor 1362, WT, CTCF
+ 22 more — browse all 62 samples with per-sample file links →
- GSE268035 STAG2 Mutations Reshape the Cohesin-Structured Spatial Chromatin Architecture to Drive Gene Regulation in Acute myeloid Leukemia 541 samples shares architecture, chromatin, reshape
- GSE272820 Multi-omics datasets for finer-scale dissection of chromatin architecture alterations in radiation induced malignant transformation of bronchial epithelial cells [Micro-C] 12 samples shares transformation, architecture, chromatin
- GSE195611 3D chromatin architecture of drug-tolerant cancer cells at single-cell resolution 410 samples shares architecture, chromatin
- GSE215328 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [hESC_H9_d049_ChIP_Seq] 135 samples shares architecture, chromatin
- GSE215323 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [HEK293T_BPK25_ChIP_Seq] 53 samples shares architecture, chromatin
- GSE278192 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [HEK293T ChIP-seq] 45 samples shares architecture, chromatin
- GSE281522 Landscape of the Epstein-Barr virus-host chromatin interactome and gene regulation 41 samples shares epstein-barr, chromatin
- GSE253694 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [HEK293T_siNURD_CTCF_ChIP_Seq] 36 samples shares architecture, chromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.