Transcriptomic signatures of antibody mediated rejection in early biopsies with negative histology in HLA incompatible kidney transplantation [RNA-seq]
RNA-seq (gene expression) · human · 32 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 32 samples: 32 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcriptomic Signatures of Antibody-mediated Rejection in Early Biopsies With Negative Histology in HLA-incompatible Kidney TransplantationTransplantation direct · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE276593_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1157891 and SRA study SRP531176. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 32 sample titles: 32 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8502711 ABMR_1, active/probable ABMR, DSA-positive
- GSM8502712 ABMR_2, active/probable ABMR, DSA-positive
- GSM8502713 ABMR_3, active/probable ABMR, DSA-positive
- GSM8502714 ABMR_4, active/probable ABMR, DSA-positive
- GSM8502715 ABMR_5, active/probable ABMR, DSA-positive
- GSM8502716 ABMR_6, active/probable ABMR, DSA-positive
- GSM8502717 ABMR_7, active/probable ABMR, DSA-positive
- GSM8502718 ABMR_8, active/probable ABMR, DSA-positive
- GSM8502719 ATN_like_ABMR_1, active/probable ABMR, DSA-positive
- GSM8502720 ATN_like_ABMR_2, active/probable ABMR, DSA-positive
- GSM8502721 ATN_like_ABMR_3, active/probable ABMR, DSA-positive
- GSM8502722 ATN_like_ABMR_4, active/probable ABMR, DSA-positive
- GSM8502723 ATN_like_ABMR_5, active/probable ABMR, DSA-positive
- GSM8502724 ATN_like_ABMR_6, active/probable ABMR, DSA-positive
- GSM8502725 ATN_like_ABMR_7, active/probable ABMR, DSA-positive
- GSM8502726 ATN_like_ABMR_8, active/probable ABMR, DSA-positive
- GSM8502727 ATN_neg_1, No-rejection, DSA-negative
- GSM8502728 ATN_neg_2, No-rejection, DSA-negative
- GSM8502729 ATN_neg_3, No-rejection, DSA-negative
- GSM8502730 ATN_neg_4, No-rejection, DSA-negative
- GSM8502731 ATN_neg_5, No-rejection, DSA-negative
- GSM8502732 ATN_neg_6, No-rejection, DSA-negative
- GSM8502733 ATN_neg_7, No-rejection, DSA-negative
- GSM8502734 ATN_neg_8, No-rejection, DSA-negative
- GSM8502735 ATN_pos_1, No-rejection, DSA-positive
- GSM8502736 ATN_pos_2, No-rejection, DSA-positive
- GSM8502737 ATN_pos_3, No-rejection, DSA-positive
- GSM8502738 ATN_pos_4, No-rejection, DSA-positive
- GSM8502739 ATN_pos_5, No-rejection, DSA-positive
- GSM8502740 ATN_pos_6, No-rejection, DSA-positive
- GSM8502741 ATN_pos_7, No-rejection, DSA-positive
- GSM8502742 ATN_pos_8, No-rejection, DSA-positive
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.