← BioTransfer GEO Dataset Finder
GEO series

Spaceflight alters protein levels and gene expression associated with cell survival and metabolic characteristics in human cardiac spheroids

GSE277713 Homo sapiens Expression profiling by high throughput sequencing 6 samples Submitted 2025/01/10 Platform GPL24676
Summary
Cardiomyocytes derived from human induced pluripotent stem cells (hiPSC-CMs) possess tremendous advantage for cardiac regeneration. However, cell survival is challenging upon cell transplantation. Since microgravity can profoundly affect cellular properties, we investigated the effect of spaceflight on hiPSC-CMs. Cardiac spheroids derived from hiPSCs were transported to the International Space Station (ISS) via the SpaceX Crew-8 mission and cultured under space microgravity for 8 days. Beating cardiac spheroids were observed on the ISS and upon successful experimentation by the astronauts in space, the live cultures were returned to Earth. These cells had normal displacement (an indicator of contraction) and Ca2+ transient parameters in 3D live cell imaging. Proteomics analysis revealed that spaceflight upregulated many proteins involved in metabolism (n=90), cellular component of mitochondrion (n=62) and regulation of proliferation (n=10). Specific metabolic pathways upregulated by spaceflight included glutathione metabolism, biosynthesis of amino acids, and pyruvate metabolism. In addition, spaceflight upregulated cellular stress response- and survival-related proteins and the AMPK signaling pathway, a master regulator of metabolism. Transcriptomic profiles indicated that spaceflight upregulated genes associated with cardiomyocyte development, and cellular components of cardiac structure and mitochondrion. Furthermore, spaceflight upregulated genes in metabolic pathways associated with cell survival such as glycerophospholipid metabolism and glycerolipid metabolism. These findings indicate that short-term exposure of the space environment to 3D hiPSC-CMs led to significant changes in protein levels and gene expression involved in cell survival and metabolism.
Published in
Spaceflight alters protein levels and gene expression associated with stress response and metabolic characteristics in human cardiac spheroids
Forghani P, Liu W, Wang Z et al. · Biomaterials 2025 · PMID 39809079 · doi:10.1016/j.biomaterials.2024.123080
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE277713_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 6 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1163421 and SRA study SRP533921. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 6 more — browse all 6 samples with per-sample file links →

Similar datasets

Search all human RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.