Ezh2 Delays Activation of Differentiation Genes During Normal Cerebellar Granule Neuron Development and in Medulloblastoma [RNA-seq]
RNA-seq (gene expression) · mouse · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 15 samples: 5 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE279346_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1172126 and SRA study SRP538154. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 15 samples.
How we read this: 5 replicated groups read from 15 sample titles; they account for 15 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8567576 GNP RNAseq E15.5 replicate 1 GNP RNAseq E15.5
- GSM8567577 GNP RNAseq E15.5 replicate 2 GNP RNAseq E15.5
- GSM8567578 GNP RNAseq E15.5 replicate 3 GNP RNAseq E15.5
- GSM8567579 GNP RNAseq P1 replicate 1 GNP RNAseq P1
- GSM8567580 GNP RNAseq P1 replicate 2 GNP RNAseq P1
- GSM8567581 GNP RNAseq P1 replicate 3 GNP RNAseq P1
- GSM8567582 GNP RNAseq P7 replicate 1 GNP RNAseq P7
- GSM8567583 GNP RNAseq P7 replicate 2 GNP RNAseq P7
- GSM8567584 GNP RNAseq P7 replicate 3 GNP RNAseq P7
- GSM8567585 GNP RNAseq P14 replicate 1 GNP RNAseq P14
- GSM8567586 GNP RNAseq P14 replicate 2 GNP RNAseq P14
- GSM8567587 GNP RNAseq P14 replicate 3 GNP RNAseq P14
- GSM8567588 MB RNAseq replicate 1 MB RNAseq
- GSM8567589 MB RNAseq replicate 2 MB RNAseq
- GSM8567590 MB RNAseq replicate 3 MB RNAseq
- GSE243942 Spatio-temporal X-linked gene reactivation in the mouse germline reveals site-specific retention of epigenetic silencing [RNA-seq] 125 samples shares activation, rna-seq
- GSE296993 H3K9 di-methylation dynamics underlies mouse minor zygotic genome activation [RNA-seq of mESC] 50 samples shares activation, rna-seq
- GSE281467 Coactivation of innate immune suppressive cells induces acquired resistance against cancer immunotherapy targeting the innate immune system [TIICs RNA-seq] 30 samples shares activation, rna-seq
- GSE245648 The Heme-regulated transcriptional repressor, BACH1 safeguards macrophage enhancer selection, activation andtissue adaptation [RNA-seq_BMDM] 24 samples shares activation, rna-seq
- GSE275510 Deciphering Motor Dysfunction and Microglial Activation in mThy1-α-Synuclein Mice: A Comprehensive Study of Behavioral, Gene Experssion, and Methylation Changes [RNA-Seq] 20 samples shares activation, rna-seq
- GSE313021 STING–IFN–CH25H lipid axis links innate immune activation to tau pathology [scRNA-seq] 16 samples shares activation, rna-seq
- GSE295196 m6A RNA methylation in the maintenance of X-chromosome inactivation and X to autosome dosage compensation in early embryogenesis [RNA-Seq] 14 samples shares activation, rna-seq
- GSE293372 Coordinate tumor-antigen uptake and dendritic cell activation by chimeric antigen receptors. [RNA-seq] 12 samples shares activation, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.