miR-193b-5p and miR-374b-5p are aberrantly expressed in endometriosis and suppress endometrial cell migration in vitro
RNA-seq (gene expression) · human · 44 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 44 samples: 44 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- miR-193b-5p and miR-374b-5p Are Aberrantly Expressed in Endometriosis and Suppress Endometrial Cell Migration In VitroBiomolecules · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE279835_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1174758 and SRA study SRP539391. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 44 sample titles: 44 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8581727 C1_CY_endometriosis302
- GSM8581728 C2_CY_endometriosis304
- GSM8581729 C3_CY_endometriosis386
- GSM8581730 C4_CY_endometriosis432
- GSM8581731 C5_CY_endometriosis436
- GSM8581732 C6_CY_endometriosis446
- GSM8581733 C7_CY_endometriosis454
- GSM8581734 C8_CY_endometriosis47
- GSM8581735 C9_CY_endometriosis155
- GSM8581736 C10_CY_endometriosis170
- GSM8581737 E1_CY_endometrioma302
- GSM8581738 E2_CY_endometrioma304
- GSM8581739 E3_CY_endometrioma386
- GSM8581740 E4_CY_endometrioma432
- GSM8581741 E5_CY_endometrioma436
- GSM8581742 E6_CY_endometrioma446
- GSM8581743 E7_CY_endometrioma454
- GSM8581744 E8_CY_endometrioma47
- GSM8581745 E9_CY_endometrioma155
- GSM8581746 E10_CY_endometrioma170
- GSM8581747 H1_HESC193M1
- GSM8581748 H2_HESC193M2
- GSM8581749 H3_HESC193M3
- GSM8581750 H4_HESC193C1
- GSM8581751 H5_HESC193C2
- GSM8581752 H6_HESC193C3
- GSM8581753 H7_HESC374M1
- GSM8581754 H8_HESC374M2
- GSM8581755 H9_HESC374M3
- GSM8581756 H10_HESC374C1
- GSM8581757 H11_HESC374C2
- GSM8581758 H12_HESC374C3
- GSM8581759 Z1_12Z193M1
- GSM8581760 Z2_12Z193M2
- GSM8581761 Z3_12Z193M3
- GSM8581762 Z4_12Z193C1
- GSM8581763 Z5_12Z193C2
- GSM8581764 Z6_12Z193C3
- GSM8581765 Z7_12Z374M1
- GSM8581766 Z8_12Z374M2
+ 4 more — browse all 44 samples with per-sample file links →
- GSE266265 Endometrial Insights: Unmasking Endometriosis through Single-Cell Profiling and AI-Based Prediction 60 samples shares endometriosis, endometrial
- GSE269530 TGFBI is upregulated in ectopic endometrial stromal cells and under hypoxic conditions in endometriosis. 20 samples shares endometriosis, endometrial
- GSE220044 Endometrial adhesion G protein-coupled receptors are dynamically expressed across the menstrual cycle and expression is altered by ovarian stimulation 20 samples shares endometrial, expressed
- GSE306395 A very low carbohydrate, ketogenic diet suppresses tumor insulin signaling and enhances immune infiltration in women with endometrial cancer: results from a randomized feasibility study. 16 samples shares endometrial, suppress
- GSE241751 N-Myc and STAT Interactor Is A Endometriosis Suppressor Gene 12 samples shares endometriosis, suppress
- GSE294255 ALDH1A1+ cells are endometrial progenitors contributing to regeneration and endometriosis [Human] 8 samples shares endometriosis, endometrial
- GSE283409 Stratifying IVF population endometria using a prognosis gradient independent of endometrial timing 195 samples shares endometrial
- GSE307568 Patient-derived organoid – immune cell co-culture platform for therapeutics discovery in high-grade endometrial cancer 189 samples shares endometrial
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.