N6-Methyladenosine reader YTHDF3 regulate Sindbis virus release by incomplete selective autophagy flux maintenance through SQSTM1
RNA-seq (gene expression) · human · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280392_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1178295 and SRA study SRP541437. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE86214 YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA 25 samples shares ythdf3, n6-methyladenosine
- GSE279022 RNA N6-Methyladenosine (m6A) regulates cell cycle progression in Diffuse Midline Glioma (DMG) and confers sensitivity to FTO inhibition 30 samples shares n6-methyladenosine, regulate
- GSE98856 N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis 25 samples shares n6-methyladenosine, regulate
- GSE281250 Deubiquitinase USP9X regulates Wnt-signaling to control CNS vascular formation and barrier maintenance [Human] 10 samples shares maintenance, regulate
- GSE236270 Nitric oxide inhibits FTO demethylase activity to regulate N6-methyladenosine mRNA methylation [MDA-MB-231-RNASeq] 6 samples shares n6-methyladenosine, regulate
- GSE236269 Nitric oxide inhibits FTO demethylase activity to regulate N6-methyladenosine mRNA methylation [MDA-MB-468-RNASeq] 6 samples shares n6-methyladenosine, regulate
- GSE255973 Discovery of a novel selective and cell-active N6-methyladenosine RNA demethylase ALKBH5 inhibitor 4 samples shares n6-methyladenosine, selective
- GSE249136 Transcriptional memory is conferred by combined heritable maintenance and local removal of selective chromatin modifications 102 samples shares maintenance, selective
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.