EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes [ULI-NChIP]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 28 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 28 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Coordinated repression of totipotency-associated gene loci by histone methyltransferase EHMT2 through binding to LINE-1 regulatory elementsbioRxiv : the preprint server for biology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280604_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1179480 and SRA study SRP541895. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 28 more — browse all 28 samples with per-sample file links →
- GSE280606 EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes 91 samples shares ehmt2, differentiation-associated, totipotency, pluripotent, regulatory, represses, distinct
- GSE280605 EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes [RNA-seq] 45 samples shares ehmt2, differentiation-associated, totipotency, pluripotent, regulatory, represses, distinct
- GSE280602 EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes [ChIP] 8 samples shares ehmt2, differentiation-associated, totipotency, pluripotent, regulatory, represses, distinct
- GSE280601 EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes [Cut & Run] 6 samples shares ehmt2, differentiation-associated, totipotency, pluripotent, regulatory, represses, distinct
- GSE280603 EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes [ChIP-exo] 2 samples shares ehmt2, differentiation-associated, totipotency, pluripotent, regulatory, represses, distinct
- GSE280599 EHMT2 represses totipotency- and differentiation-associated genes in pluripotent stem cells through distinct regulatory modes [ATAC-Seq] 2 samples shares ehmt2, differentiation-associated, totipotency, pluripotent, regulatory, represses, distinct
- GSE263285 BMAL1 represses transposable elements independently of CLOCK in pluripotent cells 20 samples shares pluripotent, represses
- GSE263279 BMAL1 represses transposable elements independently of CLOCK in pluripotent cells [ChIP-seq] 12 samples shares pluripotent, represses
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.