Dual DNA demethylation mechanisms implement epigenetic memory driven by the pioneer factor PAX7
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 38 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 38 samples: 31 distinct titles, 7 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Dual DNA demethylation mechanisms implement epigenetic memory driven by the pioneer factor PAX7Science advances · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE280822_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1180613 and SRA study SRP542341. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 38 sample titles: 31 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8605512 ATAC_AtT_ERPax7_Tam1h
- GSM8605513 ATAC_AtT_ERPax7_Tam6h
- GSM8605514 ATAC_AtT_ERPax7_Tam10d_rep1
- GSM8605515 ATAC_AtT_ERPax7_Tam10d_rep2
- GSM8605537 ChIP_AtT_ERPax7_5hmC_Tam0h
- GSM8605538 ChIP_AtT_ERPax7_5hmC_Tam1h
- GSM8605539 ChIP_AtT_ERPax7_5hmC_Tam12h
- GSM8605540 ChIP_AtT_ERPax7_5hmC_Tam24h
- GSM8605541 ChIP_AtT_ERPax7_5hmC_Tam48h
- GSM8605542 ChIP_AtT_ERPax7_5hmC_Tam48h_Mim60h
- GSM8605543 ChIP_AtT_ERPax7_5hmC_Tam72h
- GSM8605544 ChIP_AtT_ERPax7_5hmC_Tam10d
- GSM8605545 ChIP_AtT_ERPax7_Flag_Tam0h
- GSM8605546 ChIP_AtT_ERPax7_Flag_Tam1h
- GSM8605547 ChIP_AtT_ERPax7_Flag_Tam12h
- GSM8605548 ChIP_AtT_ERPax7_Flag_Tam24h
- GSM8605549 ChIP_AtT_ERPax7_Flag_Tam10d
- GSM8605550 ChIPbis_AtT_ERPax7_Tam30min
- GSM8605551 ChIPbis_AtT_ERPax7_Tam24h
- GSM8605552 ChIPbis_AtT_ERPax7_Tam48h_rep1
- GSM8605553 ChIPbis_AtT_ERPax7_Tam48h_rep2
- GSM8605554 ChIPbis_AtT_ERPax7_Tam96h
- GSM8605555 ChIPbis_AtT_ERPax7_Tam9d
- GSM8605566 RNAseq_AtT_ERPax7_Tam0h_rep1
- GSM8605567 RNAseq_AtT_ERPax7_Tam0h_rep2
- GSM8605568 RNAseq_AtT_ERPax7_Tam24h_rep1
- GSM8605569 RNAseq_AtT_ERPax7_Tam24h_rep2
- GSM8605570 RNAseq_AtT_ERPax7_Tam48h_rep1
- GSM8605571 RNAseq_AtT_ERPax7_Tam48h_rep2
- GSM8605572 RNAseq_AtT_ERPax7_Tam72h_rep1
- GSM8605573 RNAseq_AtT_ERPax7_Tam72h_rep2
- GSM8605574 WGBS_AtT_ERPax7_Tam0h
- GSM8605575 WGBS_AtT_ERPax7_Tam48h
- GSM8605576 WGBS_AtT_ERPax7_Tam48h_Mim60h
- GSM8606179 ChIP_AtT_ERPax7_Flag_Tam30min
- GSM8606180 ChIP_AtT_ERPax7_Flag_Tam4h
- GSM8830751 ChIPbis_AtT_ERPax7_Tam10d_NoTam20d_rep1
- GSM8830752 ChIPbis_AtT_ERPax7_Tam10d_NoTam20d_rep2
- GSE271884 GFI1-driven transcriptional and epigenetic programs maintain memory CD8+ T cell persistence [ATAC-seq]. 30 samples shares epigenetic, memory, driven
- GSE276632 Reciprocal genetic screens identify epigenetics factors controlling epidermal cell activation. 262 samples shares epigenetic, factor
- GSE236580 Adipose tissue retains an epigenetic memory of obesity after weight loss 135 samples shares epigenetic, memory
- GSE289642 Noncanonical PRC2 chromatin association reveals a key role of EZHIP in intergenerational epigenetic memory transition [ChIP-Seq, Cut & Run] 107 samples shares epigenetic, memory
- GSE289641 Noncanonical PRC2 chromatin association reveals a key role of EZHIP in intergenerational epigenetic memory transition [RNA-Seq] 68 samples shares epigenetic, memory
- GSE289108 Neurons undergo IFNγ-driven persistent epigenetic shifts and synaptic remodeling in the inflamed brain [ChIP-Seq] 57 samples shares epigenetic, driven
- GSE316619 Epigenetic memory of colitis promotes tumour growth 47 samples shares epigenetic, memory
- GSE313359 Hippocampal estrogen levels, receptor types and epigenetics contribute to sex-specific memory-vulnerabilities to concurrent acute stresses [Cut & Run] 45 samples shares epigenetic, memory
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.