Cell-type-specific requirement for TYK2 in murine immune cells under steady state and challenged conditions [ATAC-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 1 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 1 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Cell-type-specific requirement for TYK2 in murine immune cells under steady state and challenged conditionsCellular and molecular life sciences : CMLS · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE281133_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1182353 and SRA study SRP543327. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 1 more — browse all 1 samples with per-sample file links →
- GSE274337 Cell-type-specific requirement for TYK2 in murine immune cells under steady state and challenged conditions 12 samples shares tyk2, cell-type-specific, requirement, challenged, conditions, steady, state
- GSE281132 Cell-type-specific requirement for TYK2 in murine immune cells under steady state and challenged conditions [RNA-Seq] 8 samples shares tyk2, cell-type-specific, requirement, challenged, conditions, steady, state
- GSE272458 Cell-Type-Specific Epigenetic Priming of Gene Expression in Nucleus Accumbens by Cocaine [ATAC-seq] 26 samples shares cell-type-specific, atac-seq
- GSE252580 Context-specific requirements of Tet enzymes in the modulation of CD8 effector and memory cell fates during acute viral infection [ATAC-seq] 13 samples shares requirement, atac-seq
- GSE242000 Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation [ATAC-Seq] 6 samples shares requirement, atac-seq
- GSE333859 A global view of cell-type-specific temporal dynamics in mammalian aging 1496 samples shares cell-type-specific
- GSE299638 Tyk2 controls immunosurveillance of colorectal cancer liver metastasis 18 samples shares tyk2
- GSE331488 A global view of cell-type-specific temporal dynamics in mammalian aging [I] 771 samples shares cell-type-specific
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.