Genetically encoded fluorescent reporters to visualize Lewy pathology in live brain
RNA-seq (gene expression) · mouse · 104 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 104 samples: 38 × Experiment vs 35 × control vs 31 × ControlGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE282108_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1187209 and SRA study SRP545684. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 104 samples.
How we read this: 3 replicated groups read from 104 sample titles; they account for 104 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8636066 Experiment36 Experiment
- GSM8636067 Experiment37 Experiment
- GSM8636068 Experiment38 Experiment
- GSM8636069 Experiment39 Experiment
- GSM8636070 Experiment40 Experiment
- GSM8636071 control38 control
- GSM8636072 control39 control
- GSM8636073 control40 control
- GSM8636074 control41 control
- GSM8636075 Experiment41 Experiment
- GSM8636076 Experiment43 Experiment
- GSM8636077 Experiment44 Experiment
- GSM8636078 Experiment45 Experiment
- GSM8636079 Experiment46 Experiment
- GSM8636080 Experiment47 Experiment
- GSM8636081 Experiment48 Experiment
- GSM8636082 control42 control
- GSM8636083 control43 control
- GSM8636084 control44 control
- GSM8636085 control45 control
- GSM8636086 control46 control
- GSM8636087 control47 control
- GSM8636088 control48 control
- GSM8636089 control49 control
- GSM8636090 control50 control
- GSM8636091 control51 control
- GSM8636092 control52 control
- GSM8636093 control53 control
- GSM8636094 control54 control
- GSM8636095 control55 control
- GSM8636096 Experiment49 Experiment
- GSM8636097 Experiment52 Experiment
- GSM8636098 Experiment53 Experiment
- GSM8636099 Experiment55 Experiment
- GSM8636100 Experiment56 Experiment
- GSM8636101 control56 control
- GSM8636102 control57 control
- GSM8636103 control58 control
- GSM8636104 control59 control
- GSM8636105 control60 control
+ 64 more — browse all 104 samples with per-sample file links →
- GSE294832 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part10] 1000 samples shares genetically
- GSE294911 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part14] 1000 samples shares genetically
- GSE294535 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice[part5] 1000 samples shares genetically
- GSE294849 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part13] 1000 samples shares genetically
- GSE294826 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part9] 1000 samples shares genetically
- GSE294958 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part17] 1000 samples shares genetically
- GSE294983 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part20] 1000 samples shares genetically
- GSE294528 Modular neuroinflammatory network discovery from large-scale phenotypic screening in genetically heterogeneous mice [part4] 1000 samples shares genetically
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.