Maf1 cooperates with progesterone receptors to repress RNA polymerase III transcription of select tRNAs
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 54 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 54 samples: 54 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Maf1 cooperates with progesterone receptor to repress RNA polymerase III transcription of select tRNAsNucleic acids research · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE283978_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1196441 and SRA study SRP550589. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 54 sample titles: 54 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8675224 T47D OH replicate 1 input
- GSM8675225 T47D OH replicate 1 PR ChIP
- GSM8675226 T47D OH replicate 1 POLR3A ChIP
- GSM8675227 T47D OH replicate 1 Maf1 ChIP
- GSM8675228 T47D OH replicate 1 Brf1 ChIP
- GSM8675229 T47D OH replicate 1 H3K27Ac ChIP
- GSM8675230 T47D OH replicate 2 input
- GSM8675231 T47D OH replicate 2 PR ChIP
- GSM8675232 T47D OH replicate 2 POLR3A ChIP
- GSM8675233 T47D OH replicate 2 Maf1 ChIP
- GSM8675234 T47D OH replicate 2 Brf1 ChIP
- GSM8675235 T47D OH replicate 2 H3K27Ac ChIP
- GSM8675236 T47D OH replicate 3 input
- GSM8675237 T47D OH replicate 3 PR ChIP
- GSM8675238 T47D OH replicate 3 POLR3A ChIP
- GSM8675239 T47D OH replicate 3 Maf1 ChIP
- GSM8675240 T47D OH replicate 3 Brf1 ChIP
- GSM8675241 T47D OH replicate 3 H3K27Ac ChIP
- GSM8675242 T47D R5020 replicate 1 input
- GSM8675243 T47D R5020 replicate 1 PR ChIP
- GSM8675244 T47D R5020 replicate 1 POLR3A ChIP
- GSM8675245 T47D R5020 replicate 1 Maf1 ChIP
- GSM8675246 T47D R5020 replicate 1 Brf1 ChIP
- GSM8675247 T47D R5020 replicate 1 H3K27Ac ChIP
- GSM8675248 T47D R5020 replicate 2 input
- GSM8675249 T47D R5020 replicate 2 PR ChIP
- GSM8675250 T47D R5020 replicate 2 POLR3A ChIP
- GSM8675251 T47D R5020 replicate 2 Maf1 ChIP
- GSM8675252 T47D R5020 replicate 2 Brf1 ChIP
- GSM8675253 T47D R5020 replicate 2 H3K27Ac ChIP
- GSM8675254 T47D R5020 replicate 3 input
- GSM8675255 T47D R5020 replicate 3 PR ChIP
- GSM8675256 T47D R5020 replicate 3 POLR3A ChIP
- GSM8675257 T47D R5020 replicate 3 Maf1 ChIP
- GSM8675258 T47D R5020 replicate 3 Brf1 ChIP
- GSM8675259 T47D R5020 replicate 3 H3K27Ac ChIP
- GSM9145969 T47D OH replicate 1 POLR3C ChIP
- GSM9145970 T47D OH replicate 1 POLR3G ChIP
- GSM9145971 T47D OH replicate 1 POLR3GL ChIP
- GSM9145972 T47D OH replicate 2 POLR3C ChIP
+ 14 more — browse all 54 samples with per-sample file links →
- GSE311392 The NuRD chromatin remodeling complex regulates tRNA genes through direct interactions with RNA polymerase III [Nuclei run-on (nascent RNA) profiling] 6 samples shares iii, polymerase
- GSE196619 Synthetic transcription factor overrides persistent repressive chromatin marks 120 samples shares transcription, repress
- GSE309841 Integrative tissue analysis of men with prostate cancer VIII 42 samples shares iii
- GSE284519 TRIM33 loss reduces Androgen Receptor transcriptional output and H2BK120 ubiquitination [ChIP-seq] 93 samples shares transcription
- GSE302930 Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes 92 samples shares transcription
- GSE296190 Hypoxic regulation of chromatin and gene transcription [ChIP-seq] 84 samples shares transcription
- GSE335058 Evolutionary guided transcription factor design programs novel T cell states [ChIP-Seq] 66 samples shares transcription
- GSE293334 Allelic topological centering by transcription factors drives oncogenic multi-enhancer transcriptional regulation [ChIP-seq] 60 samples shares transcription
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.