Kif11-haploinsufficient oocytes reveal spatially differential requirements for chromosome biorientation in the spindle
RNA-seq (gene expression) · mouse · 21 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 21 samples: 6 conditions, mostly with about 4 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Kif11-haploinsufficient oocytes reveal spatially differential requirements for chromosome biorientationEMBO reports · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE284383_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1198919 and SRA study SRP551752. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 21 samples.
How we read this: 6 replicated groups read from 21 sample titles; they account for 21 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8683127 mOocyte, WtFlox, rep1 mOocyte, WtFlox,
- GSM8683128 mOocyte, WtFlox, rep2 mOocyte, WtFlox,
- GSM8683129 mOocyte, WtFlox, rep3 mOocyte, WtFlox,
- GSM8683130 mOocyte, WtFlox, rep4 mOocyte, WtFlox,
- GSM8683131 mOocyte, WtFloxCre, rep1 mOocyte, WtFloxCre,
- GSM8683132 mOocyte, WtFloxCre, rep2 mOocyte, WtFloxCre,
- GSM8683133 mOocyte, WtFloxCre, rep3 mOocyte, WtFloxCre,
- GSM8683134 mOocyte, WtFloxCre, rep4 mOocyte, WtFloxCre,
- GSM8683135 mOocyte, WtFloxCre, rep5 mOocyte, WtFloxCre,
- GSM8683136 mOocyte, FloxDel, rep1 mOocyte, FloxDel,
- GSM8683137 mOocyte, FloxDel, rep2 mOocyte, FloxDel,
- GSM8683138 mOocyte, FloxDel, rep3 mOocyte, FloxDel,
- GSM8683139 mOocyte, FloxDel, rep4 mOocyte, FloxDel,
- GSM8683140 mOocyte, FloxDelCre, rep1 mOocyte, FloxDelCre,
- GSM8683141 mOocyte, FloxDelCre, rep2 mOocyte, FloxDelCre,
- GSM8683142 mOocyte, FloxDelCre, rep3 mOocyte, FloxDelCre,
- GSM8683143 mOocyte, FloxDelCre, rep4 mOocyte, FloxDelCre,
- GSM8985477 mOocyte, FloxFloxGdfCre, rep1 mOocyte, FloxFloxGdfCre,
- GSM8985478 mOocyte, FloxFloxGdfCre, rep2 mOocyte, FloxFloxGdfCre,
- GSM8985479 mOocyte, FloxFloxZp3Cre, rep1 mOocyte, FloxFloxZp3Cre,
- GSM8985480 mOocyte, FloxFloxZp3Cre, rep2 mOocyte, FloxFloxZp3Cre,
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.