GEO series
Bulk RNA-seq profiling of human head and neck squamous cell carcinoma (HNSCC) with primary tumors and metastatic lymph nodes
GSE286234
Homo sapiens
Expression profiling by high throughput sequencing
10 samples
2025/01/31
GPL34281
Summary
This bulk RNA-seq data serves as a testing dataset for a new computational framework MONTAGE that takes an input of integrated atlas of single-cell spatial proteomics and scRNA-seq to study spatial community composition changes along functional enrichment gradient in tissue. This bulk RNA-seq dataset was generated from proximal tissue sections used for profiling spatial proteomics and was used to test the robustness of spatial community identification against the paired spatial proteomics data.
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