Functional dissection of ovarian aging-associated genes NDUFS5 and UBE2L3 through integrated genomic analyses and validation
RNA-seq (gene expression) · human · 62 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 62 samples: 32 × POI, vs 30 × Control,Groups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE288033_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1215751 and SRA study SRP559910. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 62 samples.
How we read this: 2 replicated groups read from 62 sample titles; they account for 62 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8757707 Control, rep1 Control,
- GSM8757708 Control, rep2 Control,
- GSM8757709 Control, rep3 Control,
- GSM8757710 Control, rep4 Control,
- GSM8757711 Control, rep5 Control,
- GSM8757712 Control, rep6 Control,
- GSM8757713 Control, rep7 Control,
- GSM8757714 Control, rep8 Control,
- GSM8757715 Control, rep9 Control,
- GSM8757716 Control, rep10 Control,
- GSM8757717 Control, rep11 Control,
- GSM8757718 Control, rep12 Control,
- GSM8757719 Control, rep13 Control,
- GSM8757720 Control, rep14 Control,
- GSM8757721 Control, rep15 Control,
- GSM8757722 Control, rep16 Control,
- GSM8757723 Control, rep17 Control,
- GSM8757724 Control, rep18 Control,
- GSM8757725 Control, rep19 Control,
- GSM8757726 Control, rep20 Control,
- GSM8757727 Control, rep21 Control,
- GSM8757728 Control, rep22 Control,
- GSM8757729 Control, rep23 Control,
- GSM8757730 Control, rep24 Control,
- GSM8757731 Control, rep25 Control,
- GSM8757732 Control, rep26 Control,
- GSM8757733 Control, rep27 Control,
- GSM8757734 Control, rep28 Control,
- GSM8757735 Control, rep29 Control,
- GSM8757736 Control, rep30 Control,
- GSM8757737 POI, rep1 POI,
- GSM8757738 POI, rep2 POI,
- GSM8757739 POI, rep3 POI,
- GSM8757740 POI, rep4 POI,
- GSM8757741 POI, rep5 POI,
- GSM8757742 POI, rep6 POI,
- GSM8757743 POI, rep7 POI,
- GSM8757744 POI, rep8 POI,
- GSM8757745 POI, rep9 POI,
- GSM8757746 POI, rep10 POI,
+ 22 more — browse all 62 samples with per-sample file links →
- GSE254132 Integrated Multi-Omics Profiling Reveals Neutrophil Extracellular Traps Promote Aortic Dissection 6 samples shares dissection, integrated
- GSE277596 Dissection of the immune landscape in Psoriatic Arthritis patients 635 samples shares dissection
- GSE282850 Functional dissection of metabolic trait-associated variants in steady state and stimulated human skeletal muscle cells [RNA-Seq] 15 samples shares dissection
- GSE330780 Dissection of innate-immune-ligand- and interferon-protein-mediated transcriptional responses in human THP1 cell states 117 samples shares dissection
- GSE272333 TOWARDS THE GENERATION OF A LASER CAPTURE MICRODISSECTION-BASED HUMAN ANAGEN HAIR FOLLICLE TRANSCRIPTOME ATLAS 110 samples shares dissection
- GSE241405 Single cell transcriptomic landscape of pediatric B-cell acute lymphoblastic leukemia: dissection of transcriptional heterogeneity and B-cell developmental state 89 samples shares dissection
- GSE233236 Pan-Cancer Single-Cell Dissection Reveals Phenotypically Distinct B Cell Subtypes 78 samples shares dissection
- GSE328930 The DUTRENEO trial: bulk prospective biomarker-guided therapy selection and spatial transcriptomic dissection of immunotherapy response in muscle-invasive bladder cancer 66 samples shares dissection
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.