Determining sex-specific gene expression differences in human chorion trophoblast cells
RNA-seq (gene expression) · human · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 24 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Determining Sex-Specific Gene Expression Differences in Human Chorion Trophoblast CellsInternational journal of molecular sciences · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE288056_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1215956 and SRA study SRP559986. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 24 more — browse all 24 samples with per-sample file links →
- GSE270170 Trajectory modeling of first trimester placenta highlight differences between cytotrophoblast progenitors and trophoblast stem cells [scRNA-seq] 13 samples shares differences, trophoblast
- GSE276594 Hypoxia and loss of GCM1 expression prevents differentiation and contact inhibition in human trophoblast stem cells [RNA-Seq 2] 45 samples shares trophoblast
- GSE250585 Establishment and comparison of human term placenta-derived trophoblast cells 31 samples shares trophoblast
- GSE299501 HAND1 controls the lineage divergence between amnion and trophoblast from human pluripotent stem cells 27 samples shares trophoblast
- GSE280832 Chromosomal instability in human trophoblast stem cells and placenta 26 samples shares trophoblast
- GSE293398 Sex-related differences in gene expression in early-stage bladder cancer revealed by whole-transcriptome sequencing 186 samples shares differences
- GSE267112 Derivation of human trophoblast stem cells from placentas at birth 17 samples shares trophoblast
- GSE251663 Ancestry and fetal sex differences in human placental transcriptome in spontaneous early preterm birth 118 samples shares differences
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.