Single-stranded DNA binding proteins are essential components of the architectural LDB1 protein complex [ChIP-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 77 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 77 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE288078_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1216009 and SRA study SRP560039. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 77 more — browse all 77 samples with per-sample file links →
- GSE254377 Ldb1 establishes multi-enhancer networks to regulate gene expression [ChIP-Seq] 65 samples shares ldb1, chip-seq
- GSE315109 RACK1 maintains mouse hematopoietic stem cells by directly binding to and stabilizing LDB1 [scRNA-Seq] 2 samples shares ldb1, binding
- GSE315108 RACK1 maintains mouse hematopoietic stem cells by directly binding to and stabilizing LDB1 2 samples shares ldb1, binding
- GSE215207 SINE-MIR enhancer rewiring by Esrrb architecturally reprogram the pluripotency spectrum [ChIP-Seq] 17 samples shares architectural, chip-seq
- GSE280719 Interplay between CTCF-binding and CTCF-lacking regulatory elements in generating an architectural stripe at the Igh locus 16 samples shares architectural, binding
- GSE262519 Disentangling the architectural and non-architectural functions of CTCF and cohesin in global gene regulation [ChIP-Seq] 4 samples shares architectural, chip-seq
- GSE307616 PCBP1 binding to single-stranded poly-cytosine motifs enhances cGAS sensing and impairs breast cancer development 11 samples shares single-stranded, binding
- GSE307750 PCBP1 binding to single-stranded poly-cytosine motifs enhances cGAS sensing and impairs breast cancer development [snRNA-Seq] 4 samples shares single-stranded, binding
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.