Laser-capture microdissected invasive micropapillary carcinomas of the breast
Expression microarray · human · 89 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 89 samples: 89 × breast surgical IMCGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE28821_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA138777. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 89 samples.
How we read this: 1 replicated groups read from 89 sample titles; they account for 89 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM713734 breast surgical IMC 1 breast surgical IMC
- GSM713735 breast surgical IMC 2 breast surgical IMC
- GSM713736 breast surgical IMC 3 breast surgical IMC
- GSM713737 breast surgical IMC 4 breast surgical IMC
- GSM713738 breast surgical IMC 5 breast surgical IMC
- GSM713739 breast surgical IMC 6 breast surgical IMC
- GSM713740 breast surgical IMC 7 breast surgical IMC
- GSM713741 breast surgical IMC 8 breast surgical IMC
- GSM713742 breast surgical IMC 9 breast surgical IMC
- GSM713743 breast surgical IMC 10 breast surgical IMC
- GSM713744 breast surgical IMC 11 breast surgical IMC
- GSM713745 breast surgical IMC 12 breast surgical IMC
- GSM713746 breast surgical IMC 13 breast surgical IMC
- GSM713747 breast surgical IMC 14 breast surgical IMC
- GSM713748 breast surgical IMC 15 breast surgical IMC
- GSM713749 breast surgical IMC 16 breast surgical IMC
- GSM713750 breast surgical IMC 17 breast surgical IMC
- GSM713751 breast surgical IMC 18 breast surgical IMC
- GSM713752 breast surgical IMC 19 breast surgical IMC
- GSM713753 breast surgical IMC 20 breast surgical IMC
- GSM713754 breast surgical IMC 21 breast surgical IMC
- GSM713755 breast surgical IMC 22 breast surgical IMC
- GSM713756 breast surgical IMC 23 breast surgical IMC
- GSM713757 breast surgical IMC 24 breast surgical IMC
- GSM713758 breast surgical IMC 25 breast surgical IMC
- GSM713759 breast surgical IMC 26 breast surgical IMC
- GSM713760 breast surgical IMC 27 breast surgical IMC
- GSM713761 breast surgical IMC 28 breast surgical IMC
- GSM713762 breast surgical IMC 29 breast surgical IMC
- GSM713763 breast surgical IMC 30 breast surgical IMC
- GSM713764 breast surgical IMC 31 breast surgical IMC
- GSM713765 breast surgical IMC 32 breast surgical IMC
- GSM713766 breast surgical IMC 33 breast surgical IMC
- GSM713767 breast surgical IMC 34 breast surgical IMC
- GSM713768 breast surgical IMC 35 breast surgical IMC
- GSM713769 breast surgical IMC 36 breast surgical IMC
- GSM713770 breast surgical IMC 37 breast surgical IMC
- GSM713771 breast surgical IMC 38 breast surgical IMC
- GSM713772 breast surgical IMC 39 breast surgical IMC
- GSM713773 breast surgical IMC 40 breast surgical IMC
+ 49 more — browse all 89 samples with per-sample file links →
- GSE81838 Gene expression anlaysis of laser-capture microdissected tumor and stroma from triple negative breast cancer 20 samples shares microdissected, laser-capture, breast
- GSE234519 NSABP B-41: A Study of AC Followed by a Combination of Paclitaxel Plus Trastuzumab or Lapatinib or Both Given Before Surgery to Patients With Operable HER2 Positive Invasive Breast Cancer 245 samples shares invasive, breast
- GSE280902 Identification of neoadjuvant chemotherapy response transcriptomic meta-signatures in invasive breast cancer in Latino patients 58 samples shares invasive, breast
- GSE214094 Epigenetic activation of SOX11 is associated with recurrence and progression of DCIS to invasive breast cancer 54 samples shares invasive, breast
- GSE275065 NSABP B-41: A Study of AC Followed by a Combination of Paclitaxel Plus Trastuzumab or Lapatinib or Both Given Before Surgery to Patients With Operable HER2 Positive Invasive Breast Cancer [B41_27_POST] 27 samples shares invasive, breast
- GSE278301 Immune Infiltration Correlates with Transcriptomic Subtypes in Primary ER+ Invasive Lobular Breast Cancer 21 samples shares invasive, breast
- GSE348584 A single cell and spatial atlas of preinvasive breast cancer 15 samples shares invasive, breast
- GSE297447 Preferential Release of microRNAs via Extracellular Vesicles is Associated with Ductal Carcinoma In Situ to Invasive Breast Cancer Progression [RNA-Seq] 12 samples shares invasive, breast
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.