The liver clock drives circadian rhythms in white adipose tissue [WTKOLRE]
RNA-seq (gene expression) · mouse · 72 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 72 samples: 72 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE288747_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1219186 and SRA study SRP561544. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 72 sample titles: 72 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8774465 ZT0_1 WT
- GSM8774466 ZT0_2 WT
- GSM8774467 ZT0_3 WT
- GSM8774468 ZT0_4 WT
- GSM8774469 ZT4_1 WT
- GSM8774470 ZT4_2 WT
- GSM8774471 ZT4_3 WT
- GSM8774472 ZT4_4 WT
- GSM8774473 ZT8_1 WT
- GSM8774474 ZT8_2 WT
- GSM8774475 ZT8_3 WT
- GSM8774476 ZT8_4 WT
- GSM8774477 Zt12_1 WT
- GSM8774478 Zt12_2 WT
- GSM8774479 Zt12_3 WT
- GSM8774480 Zt12_4 WT
- GSM8774481 Zt16_1 WT
- GSM8774482 Zt16_2 WT
- GSM8774483 Zt16_3 WT
- GSM8774484 Zt16_4 WT
- GSM8774485 ZT20_1 WT
- GSM8774486 ZT20_2 WT
- GSM8774487 ZT20_3 WT
- GSM8774488 ZT20_4 WT
- GSM8774489 ZT0_1 LRE
- GSM8774490 ZT0_2 LRE
- GSM8774491 ZT0_3 LRE
- GSM8774492 ZT0_4 LRE
- GSM8774493 ZT4_1 LRE
- GSM8774494 ZT4_2 LRE
- GSM8774495 ZT4_3 LRE
- GSM8774496 ZT4_4 LRE
- GSM8774497 ZT12_1 LRE
- GSM8774498 ZT12_2 LRE
- GSM8774499 ZT12_3 LRE
- GSM8774500 ZT12_4 LRE
- GSM8774501 Zt16_1 LRE
- GSM8774502 Zt16_2 LRE
- GSM8774503 Zt16_3 LRE
- GSM8774504 Zt16_4 LRE
+ 32 more — browse all 72 samples with per-sample file links →
- GSE288748 The liver clock drives circadian rhythms in white adipose tissue [AML12] 48 samples shares circadian, rhythms, adipose, drives, liver, clock, white
- GSE266543 Misaligned feeding uncouples daily rhythms within brown adipose tissue and between peripheral clocks 144 samples shares rhythms, adipose, clock
- GSE253735 Loss of skeletal muscle Bmal1 +/- Exercise Training [Mouse liver, heart, inguinal white adipose and lung tissues 64 samples shares adipose, liver, white
- GSE242901 An Intrinsically Disordered Region Controlling Condensation of a Circadian Clock Component and Rhythmic Transcription in the Liver [ChIP-seq] 45 samples shares circadian, liver, clock
- GSE267727 Transcriptome profiling of non-islet metabolic tissues in ~500 DO mouse liver, adipose, heart, and skeletal muscle tissue from mice fed high-fat, high-sugar diet [heart] 482 samples shares adipose, liver
- GSE266549 Transcriptome profiling of non-islet metabolic tissues in ~500 DO mouse liver, adipose, and skeletal muscle tissue from mice fed high-fat, high-sugar diet. [Adipose] 468 samples shares adipose, liver
- GSE190035 Characterisation of the epidermal diurnal and circadian transcriptomes of mice with tissue-specific circadian clock activity 216 samples shares circadian, clock
- GSE266472 Transcriptomic Plasticity of the Circadian Clock in Response to Photoperiod: A Study in Male Melatonin-Competent Mice 123 samples shares circadian, clock
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.