← BioTransfer GEO Dataset Finder
GEO series

Transketolase regulates endoplasmic reticulum stress independent of its enzymatic activity in the retina

GSE288853 Mus musculus Genome binding/occupancy profiling by high throughput sequencing 4 samples Submitted 2026/02/09 Platform GPL24247
Summary
Transketolase is an enzyme in the pentose phosphate pathway, with nuclear localization and non-metabolic functions reported in various cancer and other cell types. This study explores the role of transketolase in the retina, with a focus on its involvement in endoplasmic reticulum (ER) stress. Using a VEGF-overexpressing mouse model of age-related macular degeneration (AMD), we examined transketolase expression and enzymatic activity. Our results show that while transketolase expression remains stable, its enzymatic activity is significantly reduced in the AMD retina. Chromatin immunoprecipitation sequencing revealed that transketolase regulates genes involved in cellular metabolism and ER protein processing, with pathways linked to neurodegenerative diseases. We also demonstrated that transketolase directly downregulates Ern1 expression. In human Müller cells, knockdown of transketolase resulted in increased ERN1 levels and aggravated ER stress. Interestingly, inhibiting transketolase’s enzymatic activity did not affect the ER stress response, while knockdown of transketolase did not affect the cellular metabolism. These findings suggest that knockdown of transketolase regulates Ern1 translation and ER stress in the retina, independent of its enzymatic function.
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE288853_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1219632 and SRA study SRP561790. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 4 more — browse all 4 samples with per-sample file links →

Similar datasets

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.