GEO series
Anti-HIV Immunotoxin and Antibody-Drug Conjugate Targeted by the Same Anti-gp41 Antibody Display Distinct Modes of Cellular Killing
GSE289396
Homo sapiens
Expression profiling by high throughput sequencing
18 samples
2026/04/07
GPL33758
Summary
Background: We are developing cytotoxic immunoconjugates (CICs) to eradicate the persistent reservoir of HIV infection, the barrier to a cure. Having identified the most effective monoclonal antibodies (mAbs) for targeting CICs to HIV-infected cells, we investigated the efficacy and mode of killing of different forms of CICs targeted by the same mAb, an immunotoxin (IT) and antibody drug conjugate (ADC). Methods: We compared the in vitro effects of CICs made by conjugating anti-gp41 mAb 7B2 to either deglycosylated ricin A chain (7B2-dgA) or the anthracycline derivative PNU-159682 (7B2-PNU). Cytotoxicity was tested on cell lines stably expressing the HIV envelope. Metabolic and transcriptional analyses of treatment effects were performed on cells persistently infected with HIV. Results: 7B2-dgA was more potent and acted more rapidly to kill cells. 7B2-PNU induced bystander-cell killing but stimulated cell growth upon low dose or brief exposure. Six hr post treatment, 7B2-dgA elicited both metabolic and transcriptional alterations, whereas 7B2-PNU treated cells did not differ from untreated cells. At 24 hr, the profiles following both treatments differed from untreated cells and from each other. 7B2-dgA treated cells exhibited elevated intracellular levels of many AAs, and early activation of gene pathways for apoptosis and transcriptional control; later transcriptional changes included decreases in expression of enzymes involved in AA synthesis and carbon metabolism. Conclusions: An IT and ADC, each delivered by the same antibody and tested in the same cell lines showed substantial differences in their mode of killing, of potential clinical significance. The results of this side-by-side comparison of an ADC and IT have implications for the development of CICs to treat other conditions, including cancer.
Download
NCBI GEO page ↗
Paper (PMID 41993443) ↗
{# Names what the click gives you. "Open in finder" meant nothing to a
visitor who arrived from a search engine and has never seen the tool. #}
Find more
human RNA-seq datasets →
Similar datasets
- GSE328275 Single-cell RNA sequencing of CD45+ immune cells across primary tumor, sentinel tumor-draining lymph node, and axillary lymph node in treatment-naive triple-negative breast cancer 28 samples
- GSE341753 Cohesin loading at regulatory elements shapes 3D genome folding during erythropoiesis [RNA-Seq] 12 samples
- GSE319969 Spatial and Bulk Transcriptomic Profiling Defines the Molecular Evolution of Cutaneous Squamous Cell Carcinoma and Reveals Stage-Specific Biomarkers of Clinical Relevance [RNA-Seq] 24 samples
- GSE313035 METIMMOX: Colorectal Cancer METastasis - Shaping Anti-tumor IMMunity by OXaliplatin 67 samples
- GSE342462 Integrated transcriptomic and bioelectrical profiling of stem-like cellular states in a colorectal cancer using SdFFF and UHF-DEP 12 samples
- GSE339456 Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [RNA-seq] 35 samples
- GSE199939 Comprehensive transcriptomic analysis of immune-related genes in diabetic foot ulcers: New insights into mechanisms and therapeutic targets 21 samples
- GSE336982 Obesity Promotes Lung Carcinogenesis Through Airway Immune Dysfunction 183 samples
Share this dataset
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.