Epigenetic profiling of hematopoietic stem cells and leukemia stem cells

Direct links to NCBI, no account and no request form: the whole study as GSE29130_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 15 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA140445 and SRA study SRP006724. Searching any of these in the dataset finder brings you back here.

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+ 15 more — browse all 15 samples with per-sample file links →

• GSE307112 Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions [I] 886 samples
• GSE253750 Functional Characterization of Cooperating MGA Mutations in RUNX1::RUNX1T1 Acute Myeloid Leukemia [Cut&Run] 87 samples
• GSE261742 Identification of epigenetic regulators of fibrotic transformation in cardiac fibroblasts through bulk and single-cell CRISPR screens 69 samples
• GSE291268 Cardiac Radiotherapy-Induced Epigenetic Memory Underlies Electrophysiologic and Metabolic Reprogramming [ATAC-seq] 50 samples
• GSE303627 MYST acetyltransferases are a targetable therapeutic vulnerability in SETBP1-mutant leukemia [CUT&Run] 46 samples
• GSE300603 Fetal reversion from diverse lineages sustains the intestinal stem cell pool and confers stress resilience. 34 samples
• GSE285838 Histone chaperon ASF1B recruits distinct epigenetic factors in regulation of histone variant H3.3 during the fetal and adult erythropoiesis II 26 samples
• GSE247409 DDX41 heterozygosity impairs hematopoietic progenitor cell fitness and cooperates with p53 mutation to drive malignancy 26 samples

Search all ChIP / ATAC / CUT&Tag datasets in GEO →