Post-replicative initial expression of the cell fate regulator PAX6 during neuroectoderm formation
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 20 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 20 samples: 20 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Post-replicative initial expression of PAX6 during neuroectoderm differentiationThe EMBO journal · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE291908_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1235760 and SRA study SRP570309. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 20 sample titles: 20 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8844231 H9 embryonic stem cell
- GSM8844232 neural progenitor cell, differentiated 24h
- GSM8844233 neural progenitor cell, differentiated 44h
- GSM8844234 neural progenitor cell, differentiated 46h
- GSM8844235 neural progenitor cell, differentiated 48h
- GSM8844236 neural progenitor cell, differentiated 50h
- GSM8844237 neural progenitor cell, differentiated 52h
- GSM8844238 neural progenitor cell, differentiated 54h
- GSM8844239 neural progenitor cell, differentiated 72h
- GSM8844240 neural progenitor cell, differentiated 6 days
- GSM9186636 H9 embryonic stem cell [scATAC-seq]
- GSM9186637 neural progenitor cell, differentiated 24h [scATAC-seq]
- GSM9186638 neural progenitor cell, differentiated 44h [scATAC-seq]
- GSM9186639 neural progenitor cell, differentiated 46h [scATAC-seq]
- GSM9186640 neural progenitor cell, differentiated 48h [scATAC-seq]
- GSM9186641 neural progenitor cell, differentiated 50h [scATAC-seq]
- GSM9186642 neural progenitor cell, differentiated 52h [scATAC-seq]
- GSM9186643 neural progenitor cell, differentiated 54h [scATAC-seq]
- GSM9186644 neural progenitor cell, differentiated 72h [scATAC-seq]
- GSM9186645 neural progenitor cell, differentiated 6 days [scATAC-seq]
- GSE291147 Mapping convergent regulators of melanoma drug resistance by PerturbFate 320 samples shares regulator, fate
- GSE235534 BRG1 establishes the neuroectodermal chromatin landscape to restrict dorsal cell fates 41 samples shares neuroectoderm, fate
- GSE331192 Deletion of a Distal IRF4 Element Prevents Inflammation-induced Reprogramming of Human Regulatory T-cell Fate 22 samples shares regulator, fate
- GSE230342 Chromatin conformation dynamics during CD4+ Tcell activation implicates autoimmune disease associated genes and regulatory elements (HiC) 6 samples shares regulator, formation
- GSE287535 FeaSion Decodes the Regulatory Landscape and Functional Diversity of RNA Polymerase II CTD Phosphorylation 225 samples shares regulator
- GSE327101 Single-Cell Multimodal Atlas Reveals Regulatory Programs in the Human Brain 220 samples shares regulator
- GSE331167 Photoproximity labeling of c-Myc reveals SLK as a cancer-specific co-regulator 47 samples shares regulator
- GSE272082 Single-nucleus multiomics reveals the regulatory programs in three brain regions of sporadic early-onset Alzheimer's Disease 42 samples shares regulator
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.