Genomic characterization of mouse hindlimb skeletal muscles with divergent slow myofiber content at an embryonic and adult time point [RNA-Seq]
RNA-seq (gene expression) · mouse · 48 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 48 samples: 48 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Profiling the epigenomic landscape of late embryonic and adult mouse hind limb musclesScientific reports · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE292232_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1237695 and SRA study SRP571412. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 48 sample titles: 48 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8853821 E18.5, gastrocnemius, Embryo 1, RNAseq
- GSM8853822 E18.5, soleus, Embryo 1, RNAseq
- GSM8853823 E18.5, vastus lateralis, Embryo 1, RNAseq
- GSM8853824 E18.5, vastus intermedius, Embryo 1, RNAseq
- GSM8853825 E18.5, gastrocnemius, Embryo 2, RNAseq
- GSM8853826 E18.5, soleus, Embryo 2, RNAseq
- GSM8853827 E18.5, vastus lateralis, Embryo 2, RNAseq
- GSM8853828 E18.5, vastus intermedius, Embryo 2, RNAseq
- GSM8853829 E18.5, gastrocnemius, Embryo 3, RNAseq
- GSM8853830 E18.5, soleus, Embryo 3, RNAseq
- GSM8853831 E18.5, vastus lateralis, Embryo 3, RNAseq
- GSM8853832 E18.5, vastus intermedius, Embryo 3, RNAseq
- GSM8853833 E18.5, gastrocnemius, Embryo 4, RNAseq
- GSM8853834 E18.5, soleus, Embryo 4, RNAseq
- GSM8853835 E18.5, vastus lateralis, Embryo 4, RNAseq
- GSM8853836 E18.5, vastus intermedius, Embryo 4, RNAseq
- GSM8853837 E18.5, gastrocnemius, Embryo 5, RNAseq
- GSM8853838 E18.5, soleus, Embryo 5, RNAseq
- GSM8853839 E18.5, vastus lateralis, Embryo 5, RNAseq
- GSM8853840 E18.5, vastus intermedius, Embryo 5, RNAseq
- GSM8853841 E18.5, gastrocnemius, Embryo 6, RNAseq
- GSM8853842 E18.5, soleus, Embryo 6, RNAseq
- GSM8853843 E18.5, vastus lateralis, Embryo 6, RNAseq
- GSM8853844 E18.5, vastus intermedius, Embryo 6, RNAseq
- GSM8853845 Adult, gastrocnemius, Adult 4, RNAseq
- GSM8853846 Adult, soleus, Adult 4, RNAseq
- GSM8853847 Adult, vastus lateralis, Adult 4, RNAseq
- GSM8853848 Adult, vastus intermedius, Adult 4, RNAseq
- GSM8853849 Adult, gastrocnemius, Adult 5, RNAseq
- GSM8853850 Adult, soleus, Adult 5, RNAseq
- GSM8853851 Adult, vastus lateralis, Adult 5, RNAseq
- GSM8853852 Adult, vastus intermedius, Adult 5, RNAseq
- GSM8853853 Adult, gastrocnemius, Adult 6, RNAseq
- GSM8853854 Adult, soleus, Adult 6, RNAseq
- GSM8853855 Adult, vastus lateralis, Adult 6, RNAseq
- GSM8853856 Adult, vastus intermedius, Adult 6, RNAseq
- GSM8853857 Adult, gastrocnemius, Adult 7, RNAseq
- GSM8853858 Adult, soleus, Adult 7, RNAseq
- GSM8853859 Adult, vastus lateralis, Adult 7, RNAseq
- GSM8853860 Adult, vastus intermedius, Adult 7, RNAseq
+ 8 more — browse all 48 samples with per-sample file links →
- GSE308174 Bulk mRNA-seq analysis of mouse skeletal muscle, heart and liver expressing wild-type and mutant H2B 75 samples shares skeletal, rna-seq
- GSE266918 RNA-seq expression analysis of liver, adipose, skeletal muscle, heart, and pancreatic islets from DO founder strain mice fed high-fat, high-sugar diet. [heart] 63 samples shares skeletal, rna-seq
- GSE266923 RNA-seq expression analysis of liver, adipose, skeletal muscle, heart, and pancreatic islets from DO founder strain mice fed high-fat, high-sugar diet. [liver] 61 samples shares skeletal, rna-seq
- GSE266920 RNA-seq expression analysis of liver, adipose, skeletal muscle, heart, and pancreatic islets from DO founder strain mice fed high-fat, high-sugar diet. [Adipose] 61 samples shares skeletal, rna-seq
- GSE273878 Cancer-induced FOXP1 disrupts and reprograms skeletal muscle circadian transcription in cachexia [circadian RNA-seq] 48 samples shares skeletal, rna-seq
- GSE325832 RNA-seq analysis of skeletal muscle from control (Cre) and Terf2 knockout (KO) mice in gastrocnemius-plantaris-soleus (GPS) and tibialis anterior (TA) 35 samples shares skeletal, rna-seq
- GSE267909 Single-nuclei sequencing of skeletal muscle reveals subsynaptic-specific transcripts involved in neuromuscular junction maintenance (bulk RNA-Seq) 14 samples shares skeletal, rna-seq
- GSE267910 Single-nuclei sequencing of skeletal muscle reveals subsynaptic-specific transcripts involved in neuromuscular junction maintenance (snRNA-Seq) 12 samples shares skeletal, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.