Neural stem cells epigenomes and fate bias are temporally coordinated during corticogenesis [scRNA-seq]
Single-cell RNA-seq · mouse · 10 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 10 samples: 5 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Neural stem cell epigenomes and fate bias are temporally coordinated during mouse cortical developmentGenes & development · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE292318_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1237903 and SRA study SRP571422. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 10 samples.
How we read this: 5 replicated groups read from 10 sample titles; they account for 10 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8856221 scRNA-seq in E13 somatosensory mouse cortex rep1 scRNA-seq in E13 somato…
- GSM8856222 scRNA-seq in E13 somatosensory mouse cortex rep2 scRNA-seq in E13 somato…
- GSM8856223 scRNA-seq in E15 somatosensory mouse cortex rep1 scRNA-seq in E15 somato…
- GSM8856224 scRNA-seq in E15 somatosensory mouse cortex rep2 scRNA-seq in E15 somato…
- GSM8856225 scRNA-seq in E16 somatosensory mouse cortex rep1 scRNA-seq in E16 somato…
- GSM8856226 scRNA-seq in E16 somatosensory mouse cortex rep2 scRNA-seq in E16 somato…
- GSM8856227 scRNA-seq in E17 somatosensory mouse cortex rep1 scRNA-seq in E17 somato…
- GSM8856228 scRNA-seq in E17 somatosensory mouse cortex rep2 scRNA-seq in E17 somato…
- GSM8856229 scRNA-seq in E18 somatosensory mouse cortex rep1 scRNA-seq in E18 somato…
- GSM8856230 scRNA-seq in E18 somatosensory mouse cortex rep2 scRNA-seq in E18 somato…
- GSE292319 Neural stem cells epigenomes and fate bias are temporally coordinated during corticogenesis [scATAC-seq] 10 samples shares corticogenesis, coordinated, epigenomes, temporally, neural, stem, fate
- GSE290937 Multi-omics profiling of cachexia-targeted tissues reveals a spatio-temporally coordinated response to cancer 80 samples shares coordinated, temporally
- GSE282851 Functional mapping of epigenomic regulators uncovers coordinated tumor suppression by the HBO1 and MLL1 complexes [scRNA-seq] 10 samples shares coordinated, scrna-seq
- GSE295965 Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [scRNA-Seq 1] 10 samples shares coordinated, scrna-seq
- GSE303943 XIAP-coordinated PKC signaling overcomes immunotherapy resistance via immunogenic rewiring to empower therapeutic rechallenge [scRNA-seq] 2 samples shares coordinated, scrna-seq
- GSE331509 Limb cell-fate commissioning is guided by widespread coordinated genome detachment from the nuclear lamina [CUT&Tag] 62 samples shares coordinated, fate
- GSE297387 Nanoengineered STING Mucosal Adjuvant Activates Coordinated Mucosal-Systemic Immunity for Durable Cross-Protective Defense 24 samples shares coordinated, stem
- GSE293955 Limb cell-fate commissioning is guided by widespread coordinated genome detachment from the nuclear lamina [Multiome] 10 samples shares coordinated, fate
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.