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Andrographolide Ameliorates Aortic Lesion via Inhibition of NF-κB Signaling Pathway in Angiotensin-II Treated Murine Model of Abdominal Aortic Aneurysm

GSE292563 Mus musculus (mouse) RNA-seq (gene expression) 9 samples Submitted 2026/03/30 Platform GPL17021
At a glance

RNA-seq (gene expression) · mouse · 9 samples

What it is
RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
Organism
Mus musculus (mouse)
Samples
9 samples
Data you can get
A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Summary (written by the submitters)
Abstract Introduction: Abdominal aortic aneurysm (AAA) is a severe aortic disease with a high mortality rate in the event of rupture. There is an urgent need for pharmacological treatment to address the progression and development of AAA. Andrographolide, a natural anti-inflammatory compound derived from Chinese medicine, has proven effective in clinical trials for treating inflammatory diseases by selectively suppressing NFκB1 nuclear translocation.
Read the full summary ↓
However, the role of Andrographolide in the development and progression of AAA remains elusive. Methods: Genome-wide RNA sequencing analysis was performed on the aorta isolated from saline-treated mice and those treated with Ang II for 14 or 28 days. Vascular smooth muscle cells (VSMCs) differentiation markers and plasma Elisa were used to evaluate vascular phenotypic switching and inflammation. We used Andrographolide (an NFκB1 inhibitor) for the pre-treatment of vascular lesions before AAA formation and explored the underlying mechanisms through transcriptomic and functional studies. Results: We demonstrated that the NFκB signaling pathway contributes to the phenotypic switch and inflammation of vascular smooth muscle cells (VSMCs), with NFκB1 identified as a potential key gene for AAA development, particularly in the early stages of the aneurysm. Andrographolide significantly attenuated vascular lesions at the early stage and reduced aneurysm formation at the later stages of the disease in Ang II-treated AAA mice. Our ChIP results further demonstrated that NFκB1 regulates its direct target KLF4 to induce VSMC dedifferentiation. Meanwhile, TNF-alpha was identified as a target of NFκB1, indicating that NFκB1 exacerbates inflammation via the TNF-alpha signaling pathway. Discussion: Our results demonstrate a previously unrecognized role of vascular lesions in AAA development and progression, and the pre-treatment with Andrographolide may serve as a novel therapeutic approach for AAA.
This dataset
Download · which file do I need?

Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.

1 · Just have a look

Processed table

The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.

2 · Re-analyse it

Supplementary files

The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE292563_RAW.tar (it can run to tens of gigabytes).

3 · Start from the raw reads

Raw sequencing reads

The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.

What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.

Also filed as BioProject PRJNA1240221 and SRA study SRP572179. Searching any of these in the dataset finder brings you back here.

Samples in this study

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+ 9 more — browse all 9 samples with per-sample file links →

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