Regional information in dental mesenchyme
RNA-seq (gene expression) · mouse · 24 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 24 samples: 8 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Prespecified dental mesenchymal cells for the making of a toothInternational journal of oral science · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE292940_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1242208 and SRA study SRP573210. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 24 samples.
How we read this: 8 replicated groups read from 24 sample titles; they account for 24 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8869841 Cap_W, rep1 Cap_W,
- GSM8869842 Cap_W, rep2 Cap_W,
- GSM8869843 Cap_W, rep3 Cap_W,
- GSM8869844 Cap_L, rep1 Cap_L,
- GSM8869845 Cap_L, rep2 Cap_L,
- GSM8869846 Cap_L, rep3 Cap_L,
- GSM8869847 Cap_B, rep1 Cap_B,
- GSM8869848 Cap_B, rep2 Cap_B,
- GSM8869849 Cap_B, rep3 Cap_B,
- GSM8869850 Cap_L_2D, rep1 Cap_L_2D,
- GSM8869851 Cap_L_2D, rep2 Cap_L_2D,
- GSM8869852 Cap_L_2D, rep3 Cap_L_2D,
- GSM8869853 Cap_B_2D, rep1 Cap_B_2D,
- GSM8869854 Cap_B_2D, rep2 Cap_B_2D,
- GSM8869855 Cap_B_2D, rep3 Cap_B_2D,
- GSM8869856 Bell_L, rep1 Bell_L,
- GSM8869857 Bell_L, rep2 Bell_L,
- GSM8869858 Bell_L, rep3 Bell_L,
- GSM8869859 Bell_B, rep1 Bell_B,
- GSM8869860 Bell_B, rep2 Bell_B,
- GSM8869861 Bell_B, rep3 Bell_B,
- GSM8869862 Bell_W, rep1 Bell_W,
- GSM8869863 Bell_W, rep2 Bell_W,
- GSM8869864 Bell_W, rep3 Bell_W,
- GSE297137 Distinct BMP-Smad Signaling Outputs Confer Diverse Functions in Dental Mesenchyme [RNA-seq] 8 samples shares mesenchyme, dental
- GSE297138 Distinct BMP-Smad Signaling Outputs Confer Diverse Functions in Dental Mesenchyme 18 samples shares mesenchyme, dental
- GSE296697 Distinct BMP-Smad Signaling Outputs Confer Diverse Functions in Dental Mesenchyme [ChIP-seq] 6 samples shares mesenchyme, dental
- GSE297033 Distinct BMP-Smad Signaling Outputs Confer Diverse Functions in Dental Mesenchyme [CUT&Run] 4 samples shares mesenchyme, dental
- GSE283594 Single-cell RNA-seq analysis of pancreatic progenitor cells and mesenchyme from mouse embryos 576 samples shares mesenchyme
- GSE302208 Regional encoding of enteric nervous system responses to microbiota and type 2 inflammation [Neuron SmartSeq2] 169 samples shares regional
- GSE290816 Cell autonomous regional differences in oligodendrocyte precursor cell development and response to oncohistone H3.3 K27M [RNA-seq] 142 samples shares regional
- GSE303433 Nox1 and Npy1r mark regional colon stem cell populations that serve as cancer origins in vivo [RNA-seq2] 60 samples shares regional
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.