Custom Illumina array DNA methylation analysis of 384 CpGs across five cancer types
DNA methylation · human · 290 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Topic
- Wilms tumourThis series is part of our curated briefing on it.
- Samples
- 290 samples: 290 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE29505_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA141391. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 122 samples read as cases, 138 as controls.
How we read this: Read from 290 sample titles: 290 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM730227 Genomic DNA from breast normal tissue 1 (Breast_N1)
- GSM730228 Genomic DNA from breast normal tissue 10 (Breast_N10)
- GSM730229 Genomic DNA from breast normal tissue 11 (Breast_N11)
- GSM730230 Genomic DNA from breast normal tissue 12 (Breast_N12)
- GSM730231 Genomic DNA from breast normal tissue 13 (Breast_N13)
- GSM730232 Genomic DNA from breast normal tissue 14 (Breast_N14)
- GSM730233 Genomic DNA from breast normal tissue 15 (Breast_N15)
- GSM730234 Genomic DNA from breast normal tissue 16 (Breast_N16)
- GSM730235 Genomic DNA from breast normal tissue 17 (Breast_N17)
- GSM730236 Genomic DNA from breast normal tissue 18 (Breast_N18)
- GSM730237 Genomic DNA from breast normal tissue 19 (Breast_N19)
- GSM730238 Genomic DNA from breast normal tissue 2 (Breast_N2)
- GSM730239 Genomic DNA from breast normal tissue 20 (Breast_N20)
- GSM730240 Genomic DNA from breast normal tissue 21 (Breast_N21)
- GSM730241 Genomic DNA from breast normal tissue 22 (Breast_N22)
- GSM730242 Genomic DNA from breast normal tissue 23 (Breast_N23)
- GSM730243 Genomic DNA from breast normal tissue 24 (Breast_N24)
- GSM730244 Genomic DNA from breast normal tissue 25 (Breast_N25)
- GSM730245 Genomic DNA from breast normal tissue 26 (Breast_N26)
- GSM730246 Genomic DNA from breast tumor 3 (Breast_T3)
- GSM730247 Genomic DNA from breast tumor 4 (Breast_T4)
- GSM730248 Genomic DNA from breast normal tissue 5 (Breast_N5)
- GSM730249 Genomic DNA from breast normal tissue 6 (Breast_N6)
- GSM730250 Genomic DNA from breast normal tissue 7 (Breast_N7)
- GSM730251 Genomic DNA from breast normal tissue 8 (Breast_N8)
- GSM730252 Genomic DNA from breast normal tissue 9 (Breast_N9)
- GSM730253 Genomic DNA from breast tumor 1 (Breast_T1)
- GSM730254 Genomic DNA from breast tumor 10 (Breast_T10)
- GSM730255 Genomic DNA from breast tumor 11 (Breast_T11)
- GSM730256 Genomic DNA from breast tumor 12 (Breast_T12)
- GSM730257 Genomic DNA from breast tumor 13 (Breast_T13)
- GSM730258 Genomic DNA from breast tumor 14 (Breast_T14)
- GSM730259 Genomic DNA from breast tumor 15 (Breast_T15)
- GSM730260 Genomic DNA from breast tumor 16 (Breast_T16)
- GSM730261 Genomic DNA from breast tumor 17 (Breast_T17)
- GSM730262 Genomic DNA from breast tumor 18 (Breast_T18)
- GSM730263 Genomic DNA from breast tumor 19 (Breast_T19)
- GSM730264 Genomic DNA from breast tumor 2 (Breast_T2)
- GSM730265 Genomic DNA from breast tumor 20 (Breast_T20)
- GSM730266 Genomic DNA from breast tumor 21 (Breast_T21)
+ 250 more — browse all 290 samples with per-sample file links →
- GSE303967 DNA methylation and transcriptomic profiles of Wilms tumour reveal new deregulated genes and epigenetic processes relevant for tumour stratification and management 45 samples same disease briefing · shares methylation
- GSE66405 mRNA expression profiles in Wilms tumor subtypes 32 samples same disease briefing · shares types
- GSE25965 Transduction signaling signature of Wilms tumor revealed by parallel analysis of kidney differentiation 78 samples same disease briefing
- GSE298483 Induction of a renal developmental cell state is associated with chemotherapy resistance in favorable-histology Wilms tumor 62 samples same disease briefing
- GSE200256 Single nuclear RNASeq Analysis of Anaplastic and Favourable Histology Hu_Wilms Tumor 40 samples same disease briefing
- GSE270330 Proteasome inhibition sensitizes anaplastic Wilms tumor to actinomycin D 36 samples same disease briefing
- GSE243871 Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney 28 samples same disease briefing
- GSE273662 Molecular characterization of Wilms' Tumor: insights from single nucleus analystics on Wilms' Tumor development and oncogenesis 14 samples same disease briefing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.