Transcription factor NFYA directs male meiotic entry by facilitating accessible chromatin at meiotic promoters in mice
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 32 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 32 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Transcription factor NFYA directs male meiotic entry by regulating accessible chromatin at meiotic promoters in miceThe EMBO journal · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE295991_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1257271 and SRA study SRP582155. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 32 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8961806 ATAC-seq of sorted spermatogonia cells from adult testis, replicate 1 ATAC-seq of sorted sper…
- GSM8961807 ATAC-seq of sorted spermatogonia cells from adult testis, replicate 2 ATAC-seq of sorted sper…
- GSM8961808 ATAC-seq of sorted spermatogonia cells from adult testis, replicate 3 ATAC-seq of sorted sper…
- GSM8961809 ATAC-seq of sorted leptotene/zygotene cells from adult testis, replicate 1 ATAC-seq of sorted lept…
- GSM8961810 ATAC-seq of sorted leptotene/zygotene cells from adult testis, replicate 2 ATAC-seq of sorted lept…
- GSM8961811 ATAC-seq of sorted leptotene/zygotene cells from adult testis, replicate 3 ATAC-seq of sorted lept…
- GSM8961812 ATAC-seq of sorted pachytene/diplotene cells from adult testis, replicate 1 ATAC-seq of sorted pach…
- GSM8961813 ATAC-seq of sorted pachytene/diplotene cells from adult testis, replicate 2 ATAC-seq of sorted pach…
- GSM8961814 ATAC-seq of sorted pachytene/diplotene cells from adult testis, replicate 3 ATAC-seq of sorted pach…
- GSM8962348 CUT&Run(H3K4me3) of sorted pachytene/diplotene cells from adult testis
- GSM8962349 CUT&Run (IgG) of sorted leptotene/zygotene cells from adult testis
- GSM8962350 CUT&Run (IgG) of sorted pachytene/diplotene cells from adult testis
- GSM8962351 CUT&Run (IgG) of sorted Spermatogonia cells from adult testis
- GSM8962352 CUT&Run (NFYA) of sorted leptotene/zygotene cells from adult testis,replicate 1 CUT&Run (NFYA) of sorte…
- GSM8962353 CUT&Run (NFYA) of sorted leptotene/zygotene cells from adult testis,replicate 2 CUT&Run (NFYA) of sorte…
- GSM8962354 CUT&Run (NFYA) of sorted leptotene/zygotene cells from adult testis,replicate 3 CUT&Run (NFYA) of sorte…
- GSM8962355 CUT&Run (NFYA) of sorted pachytene/diplotene cells from adult testis,replicate 1 CUT&Run (NFYA) of sorte…
- GSM8962356 CUT&Run (NFYA) of sorted pachytene/diplotene cells from adult testis,replicate 2 CUT&Run (NFYA) of sorte…
- GSM8962357 CUT&Run (NFYA) of sorted pachytene/diplotene cells from adult testis,replicate 3 CUT&Run (NFYA) of sorte…
- GSM8962358 CUT&Run (NFYA) of sorted Spermatogonia cells from adult testis, replicate 1 CUT&Run (NFYA) of sorte…
- GSM8962359 CUT&Run (NFYA) of sorted Spermatogonia cells from adult testis, replicate 2 CUT&Run (NFYA) of sorte…
- GSM8962360 CUT&Run (NFYA) of sorted Spermatogonia cells from adult testis, replicate 3 CUT&Run (NFYA) of sorte…
- GSM8970449 Mus musculus Testis 11dpp single-cell RNA-seq
- GSM8970450 Mus musculus Testis 17dpp single-cell RNA-seq
- GSM8970451 Mus musculus Testis 25dpp single-cell RNA-seq
- GSM8970452 Mus musculus Testis 11dpp single-cell ATAC-seq
- GSM8970453 Mus musculus Testis 17dpp single-cell ATAC-seq
- GSM8970454 Mus musculus Testis 25dpp single-cell ATAC-seq
- GSM8970455 Mus musculus Testis NFYA_CKO_single-cell ATAC-seq
- GSM8970456 Mus musculus Testis Cre_single-cell ATAC-seq
- GSM8970457 Mus musculus Testis NFYA_CKO_single-cell RNA-seq
- GSM8970458 Mus musculus Testis Cre_single-cell RNA-seq
- GSE296438 Transcription factor NFYA directs male meiotic entry by facilitating accessible chromatin at the promoters of genes expressed during meiosis [scRNA-seq & scATAC-seq] 10 samples shares nfya, transcription, facilitating, accessible, chromatin, promoters, directs, meiotic
- GSE283958 Cohesin recruitment to promoters and enhancers by general transcription factors and chromatin regulators 47 samples shares transcription, chromatin, promoters
- GSE241378 Alternative splicing of a chromatin modifier alters the transcriptional regulatory programs of embryonic stem cell maintenance and neuronal differentiation. 36 samples shares transcription, chromatin
- GSE237534 INO80 / SWR remodelers regulate Pol II transcription through BRD2 and chromatin landscape 217 samples shares transcription, chromatin
- GSE200323 Establishment of chromatin architecture interplays with embryo hypertranscription 158 samples shares transcription, chromatin
- GSE294772 Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging [snATAC-Seq] [10X Multiome] 142 samples shares transcription, chromatin
- GSE294521 Transcriptional remodeling by OTX2 directs specification and patterning of mammalian definitive endoderm [CUTnTAG] 34 samples shares transcription, directs
- GSE279796 Setdb1 regulates proper differentiation of adult intestinal stem cells via restraining permissive chromatin structure and transcriptional variability 18 samples shares transcription, chromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.