Efficient profiling of total RNA in single cells with STORM-seq
Single-cell RNA-seq · human · 89 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 89 samples: 88 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE296406_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1259231 and SRA study SRP331263. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 89 sample titles: 88 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5505351 K-562 STORM-seq cell 1 [A10]
- GSM5505352 K-562 STORM-seq cell 2 [A2]
- GSM5505353 K-562 STORM-seq cell 3 [A3]
- GSM5505354 K-562 STORM-seq cell 4 [A4]
- GSM5505355 K-562 STORM-seq cell 5 [A5]
- GSM5505356 K-562 STORM-seq cell 6 [A6]
- GSM5505357 K-562 STORM-seq cell 7 [A7]
- GSM5505358 K-562 STORM-seq cell 8 [A8]
- GSM5505359 K-562 STORM-seq cell 9 [A9]
- GSM5505360 K-562 STORM-seq cell 10 [B1]
- GSM5505361 K-562 STORM-seq cell 11 [B2]
- GSM5505362 K-562 STORM-seq cell 12 [B3]
- GSM5505363 K-562 STORM-seq cell 13 [B4]
- GSM5505364 K-562 STORM-seq cell 14 [B5]
- GSM5505365 K-562 STORM-seq cell 15 [B6]
- GSM5505366 K-562 STORM-seq cell 16 [B7]
- GSM5505367 K-562 STORM-seq cell 17 [B8]
- GSM5505368 K-562 STORM-seq cell 18 [B9]
- GSM5505369 K-562 STORM-seq cell 19 [C1]
- GSM5505370 K-562 STORM-seq cell 20 [C2]
- GSM5505371 K-562 STORM-seq cell 21 [C3]
- GSM5505372 K-562 STORM-seq cell 22 [C4]
- GSM5505373 K-562 STORM-seq cell 23 [C5]
- GSM5505374 K-562 STORM-seq cell 24 [C6]
- GSM5505375 K-562 STORM-seq cell 25 [C7]
- GSM5505376 K-562 STORM-seq cell 26 [C8]
- GSM5505377 K-562 STORM-seq cell 27 [C9]
- GSM5505378 K-562 STORM-seq cell 28 [D1]
- GSM5505379 K-562 STORM-seq cell 29 [D2]
- GSM5505380 K-562 STORM-seq cell 30 [D3]
- GSM5505381 K-562 STORM-seq cell 31 [D4]
- GSM5505382 K-562 STORM-seq cell 32 [D5]
- GSM5505383 K-562 STORM-seq cell 33 [D6]
- GSM5505384 K-562 STORM-seq cell 34 [D7]
- GSM5505385 K-562 STORM-seq cell 35 [D8]
- GSM5505386 K-562 STORM-seq cell 36 [E1]
- GSM5505387 K-562 STORM-seq cell 37 [E2]
- GSM5505388 K-562 STORM-seq cell 38 [E3]
- GSM5505389 K-562 STORM-seq cell 39 [E4]
- GSM5505390 K-562 STORM-seq cell 40 [E5]
+ 49 more — browse all 89 samples with per-sample file links →
- GSE254249 Remodeling of T and endothelial cells during total neoadjuvant therapy in rectal cancer 92 samples shares total
- GSE186334 Compartment-specific total RNA profile of Hippocampal and Cortical cells from Mesial Temporal Lobe Epilepsy tissue 68 samples shares total
- GSE282451 Gene expression profiling (total RNA-Seq) of HCV susceptibility Cells, Huh7.5 cell lines and primary human hepatocyte cells 5 samples shares total
- GSE267656 Efficient generation of human retinal pigment epithelium cells via chemically induced pluripotency 39 samples shares efficient
- GSE270343 High-Fidelity, Efficient Human Post-Implantation Embryo Models Generated by STAT3-Induced Cell Plasticity [scRNA-Seq] 196 samples shares efficient
- GSE310060 Efficient Chemical Reprogramming of Human T Cells into Functional Megakaryocytes and Platelets 24 samples shares efficient
- GSE245984 Profiling circular RNAs across human embryonic stem cell differentiation identifies the role of circACVR2A(4-6) in neuroectoderm lineage differentiation [Total_circACRVA] 18 samples shares total
- GSE246558 Homology mediated end joining enables efficient non-viral targeted integration of large DNA templates in primary human T cells 18 samples shares efficient
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.