Chemoradiation Reprograms Tumor Cells and Immune Microenvironment In Cervical Cancer [scRNA-seq]
Single-cell RNA-seq · human · 18 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Homo sapiens (human)
- Samples
- 18 samples: 14 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Chemoradiation Reprograms Tumor Cells and the Immune Microenvironment in Cervical CancerCancer research · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE297041_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1262429 and SRA study SRP584945. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 18 sample titles: 14 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8982138 321, cervix, on-RT#2
- GSM8982139 322, cervix, pre-RT
- GSM8982140 322, cervix, on-RT#1
- GSM8982141 322, cervix, on-RT#2
- GSM8982142 323, cervix, pre-RT
- GSM8982143 323, cervix, on-RT#1
- GSM8982144 323, cervix, on-RT#2
- GSM8982145 324, cervix, pre-RT
- GSM8982146 325, cervix, pre-RT
- GSM8982147 326, cervix, pre-RT
- GSM8982148 326, cervix, on-RT#1
- GSM8982149 326, cervix, on-RT#2
- GSM8982150 327, cervix, pre-RT
- GSM8982151 330, cervix, pre-RT
- GSM8982152 331, cervix, pre-RT
- GSM8982153 331, cervix, on-RT#1
- GSM8982154 331, cervix, on-RT#2
- GSM8982155 332, cervix, pre-RT
- GSE297038 Chemoradiation Reprograms Tumor Cells and Immune Microenvironment In Cervical Cancer [bulk RNA-seq] 34 samples shares microenvironment, chemoradiation, reprograms, cervical
- GSE309595 Longitudinal Analysis of Multiple Myeloma: Therapeutic Response and Immune Microenvironment Dynamics in the Context of Tumor Heterogeneity [scRNA-seq] 270 samples shares microenvironment, scrna-seq
- GSE268238 Characterization of the Tumor Immune Microenvironment in Gastric Cancer by Single-Cell RNA Sequencing Analysis 17 samples shares microenvironment
- GSE280311 Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [Flex] 12 samples shares microenvironment
- GSE222556 Neoadjuvant PARPi or Chemotherapy in Ovarian Cancer Informs Targeting Effector Treg Cells for Homologous-Recombination-Deficient Tumors [10x scRNA-seq] 67 samples shares scrna-seq
- GSE314812 Divergent clonal evolution and tumor microenvironment remodeling shape gastric cancer peritoneal metastasis 55 samples shares microenvironment
- GSE309004 Molecular determinants of neoadjuvant chemotherapy resistance in breast cancer: An analysis of gene expression and tumor microenvironment 54 samples shares microenvironment
- GSE280318 Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling 39 samples shares microenvironment
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.