ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment.
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 126 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 126 samples: 51 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ChAHP silences SINE retrotransposons by inhibiting TFIIIB recruitmentMolecular cell · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE297837_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1266251 and SRA study SRP587035. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 122 samples.
How we read this: 51 replicated groups read from 126 sample titles; they account for 122 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9000627 RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000628 RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000629 RNA-seq in ADNP-FKBP12 mESC, ctrl, 1h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000630 RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000631 RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000632 RNA-seq in ADNP-FKBP12 mESC, ctrl, 24h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000633 RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000634 RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000635 RNA-seq in ADNP-FKBP12 mESC, ctrl, 4h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000636 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 1h, replicate 1
- GSM9000637 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 1h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000638 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 1h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000639 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000640 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000641 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 24h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000642 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000643 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000644 RNA-seq in ADNP-FKBP12 mESC, dTAG13, 4h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000645 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl, 24h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000646 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl, 24h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000647 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, ctrl, 24h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000648 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG13, 24h, replicate 1 RNA-seq in ADNP-FKBP12 …
- GSM9000649 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG13, 24h, replicate 2 RNA-seq in ADNP-FKBP12 …
- GSM9000650 RNA-seq in ADNP-FKBP12 CTCF-FKBP12 mESC, dTAG13, 24h, replicate 3 RNA-seq in ADNP-FKBP12 …
- GSM9000651 RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, replicate 1 RNA-seq in CTCF-FKBP12 …
- GSM9000652 RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, replicate 2 RNA-seq in CTCF-FKBP12 …
- GSM9000653 RNA-seq in CTCF-FKBP12 mESC, ctrl, 24h, replicate 3 RNA-seq in CTCF-FKBP12 …
- GSM9000654 RNA-seq in CTCF-FKBP12 mESC, dTAG13, 24h, replicate 1 RNA-seq in CTCF-FKBP12 …
- GSM9000655 RNA-seq in CTCF-FKBP12 mESC, dTAG13, 24h, replicate 2 RNA-seq in CTCF-FKBP12 …
- GSM9000656 RNA-seq in CTCF-FKBP12 mESC, dTAG13, 24h, replicate 3 RNA-seq in CTCF-FKBP12 …
- GSM9000657 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 24h, replicate 1 RNA-seq in GTF3C1-FKBP1…
- GSM9000658 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 24h, replicate 2 RNA-seq in GTF3C1-FKBP1…
- GSM9000659 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 24h, replicate 3 RNA-seq in GTF3C1-FKBP1…
- GSM9000660 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 24h, replicate 1 RNA-seq in GTF3C1-FKBP1…
- GSM9000661 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 24h, replicate 2 RNA-seq in GTF3C1-FKBP1…
- GSM9000662 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 24h, replicate 3 RNA-seq in GTF3C1-FKBP1…
- GSM9000663 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 4h, replicate 1 RNA-seq in GTF3C1-FKBP1…
- GSM9000664 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 4h, replicate 2 RNA-seq in GTF3C1-FKBP1…
- GSM9000665 RNA-seq in GTF3C1-FKBP12 mESC, ctrl, 4h, replicate 3 RNA-seq in GTF3C1-FKBP1…
- GSM9000666 RNA-seq in GTF3C1-FKBP12 mESC, dTAG13, 4h, replicate 1 RNA-seq in GTF3C1-FKBP1…
+ 86 more — browse all 126 samples with per-sample file links →
- GSE297834 ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment [ChIP-seq] 72 samples shares tfiiib, sine, retrotransposons, recruitment, inhibiting, silences, chahp
- GSE297833 ChAHP Silences SINE Retrotransposons by Inhibiting TFIIIB Recruitment [RNA-seq] 54 samples shares tfiiib, sine, retrotransposons, recruitment, inhibiting, silences, chahp
- GSE247620 Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells 22 samples shares sine, retrotransposons
- GSE215453 SINE-MIR enhancer rewiring by Esrrb architecturally reprogram the pluripotency spectrum 78 samples shares sine
- GSE247343 Tyrosine phosphorylation of both STAT5A and STAT5B is necessary for maximal IL-2 signaling and its mitogenic action 57 samples shares sine
- GSE341379 Distinct histone 3 lysine methylation states underlie tumor immune surveillance 50 samples shares sine
- GSE291449 T cell receptor signaling induces expression of lysine demethylase KDM6B to maintain Treg homeostasis 46 samples shares sine
- GSE281007 Lysine Crotonylation Acts as an Epigenetic Switch for Glutamate Neurotransmission and Spatial Memory 12 samples shares sine
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.