Single-cell sequencing of CD45+ cells isolated from nasal mucosa of mice
Single-cell RNA-seq · mouse · 18 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 18 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Therapy of allergic rhinitis using ribavirin spray to clear nasal commensal virusesSignal transduction and targeted therapy · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE297921_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1263650 and SRA study SRP586043. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 18 sample titles: 18 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9002002 PBS control treated with vehicle, replicate 1, scRNAseq
- GSM9002003 PBS control treated with vehicle, replicate 2, scRNAseq
- GSM9002004 PBS control treated with vehicle, replicate 3, scRNAseq
- GSM9002005 PBS control treated with ribavirin, replicate 1, scRNAseq
- GSM9002006 PBS control treated with ribavirin, replicate 2, scRNAseq
- GSM9002007 PBS control treated with ribavirin, replicate 3, scRNAseq
- GSM9002008 OVA-induced AR mice treated with vehicle, replicate 1, scRNAseq
- GSM9002009 OVA-induced AR mice treated with vehicle, replicate 2, scRNAseq
- GSM9002010 OVA-induced AR mice treated with vehicle, replicate 3, scRNAseq
- GSM9002011 OVA-induced AR mice treated with ribavirin, replicate 1, scRNAseq
- GSM9002012 OVA-induced AR mice treated with ribavirin, replicate 2, scRNAseq
- GSM9002013 OVA-induced AR mice treated with ribavirin, replicate 3, scRNAseq
- GSM9002014 HDM-induced AR mice treated with vehicle, replicate 1, scRNAseq
- GSM9002015 HDM-induced AR mice treated with vehicle, replicate 2, scRNAseq
- GSM9002016 HDM-induced AR mice treated with vehicle, replicate 3, scRNAseq
- GSM9002017 HDM-induced AR mice treated with ribavirin, replicate 1, scRNAseq
- GSM9002018 HDM-induced AR mice treated with ribavirin, replicate 2, scRNAseq
- GSM9002019 HDM-induced AR mice treated with ribavirin, replicate 3, scRNAseq
- GSE313761 Single-cell screens identify ADAM12 as a fibroblast checkpoint impeding anti-tumor immunity - scRNA-seq of Adam12CKO Mouse Model CD45- cells 11 samples shares cd45, single-cell
- GSE278003 Single cell RNA sequencing of CD45+ immune cells from tumor and tumor-adjacent mammary adipose tissue in a postmenopausal breast cancer model of lean, obese, and weight loss Trem2+/+ and Trem2-/- mice 92 samples shares cd45
- GSE192687 Single-cell RNAseq analysis of renal endothelial cells in murine diabetic nephropathy 5464 samples shares single-cell
- GSE309471 Single-cell RNA sequencing of lung cells from bleomycin-induced and doxycycline-inducible TGF-β transgenic mouse models of pulmonary fibrosis 46 samples shares single-cell
- GSE166225 Inference of emergent spatio-temporal processes from single-cell sequencing reveals feedback between de novo DNA methylation and chromatin condensates [RNA-seq] 288 samples shares single-cell
- GSE256502 Sex differences in Non-Alcoholic Steatohepatitis (NASH) in mice evoked by a fructose-palmitate-cholesterol (FPC)-enriched diet [bulk_isolated_cells] 31 samples shares isolated
- GSE279927 RNA next-generation sequencing of cardiac fibroblasts isolated from young and old mice 7 days post-MI 25 samples shares isolated
- GSE302019 Bulk RNA sequencing to investigate transcriptional profiles of lung macrophage subpopulations isolated from wild-type C57BL/6J and Spp1-EGFP knock-in reporter mice subjected to intratracheal administration of bleomycin or PBS. 24 samples shares isolated
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.