Mecp2 acts as a key stabilizer of glucocorticoid-induced genes in active chromatin regions [scATAC-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 81 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 81 samples: 58 distinct titles, 12 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE298162_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1257593 and SRA study SRP582582. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 81 sample titles: 58 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9009305 pan_tissue_AdrenalGland_KO
- GSM9009306 pan_tissue_Bladder_KO
- GSM9009307 pan_tissue_BoneMarrow_KO
- GSM9009308 pan_tissue_BrainStem_KO
- GSM9009309 pan_tissue_BrownFat_KO
- GSM9009310 pan_tissue_Cerebellum_KO
- GSM9009311 pan_tissue_Diencephalon_KO
- GSM9009312 pan_tissue_Epididymis_KO
- GSM9009313 pan_tissue_Eye_KO
- GSM9009314 pan_tissue_Heart_KO
- GSM9009315 pan_tissue_Kidney_KO
- GSM9009316 pan_tissue_LargeIntestine_KO
- GSM9009317 pan_tissue_Liver_KO
- GSM9009318 pan_tissue_Lung_KO
- GSM9009319 pan_tissue_LymphNode_KO
- GSM9009320 pan_tissue_Muscle_KO
- GSM9009321 pan_tissue_Pancreas_KO
- GSM9009322 pan_tissue_Pituitary_KO
- GSM9009323 pan_tissue_Prostate_KO
- GSM9009324 pan_tissue_SmallIntestine_KO
- GSM9009325 pan_tissue_SpinalCord_KO
- GSM9009326 pan_tissue_Spleen_KO
- GSM9009327 pan_tissue_Stomach_KO
- GSM9009328 pan_tissue_Telencephalon_KO
- GSM9009329 pan_tissue_Testis_KO
- GSM9009330 pan_tissue_Thymus_KO
- GSM9009331 pan_tissue_Thyroid_KO
- GSM9009332 pan_tissue_WhiteFat_KO
- GSM9009333 pan_tissue_AdrenalGland_WT
- GSM9009334 pan_tissue_BrownFat_WT
- GSM9009335 pan_tissue_Epididymis_WT
- GSM9009336 pan_tissue_Eye_WT
- GSM9009337 pan_tissue_Thyroid_WT
- GSM9009338 pan_tissue_WhiteFat_WT
- GSM9009339 neural_BrainStem_KO_rep1
- GSM9009340 neural_BrainStem_KO_rep2
- GSM9009341 neural_BrainStem_KO_rep3
- GSM9009342 neural_BrainStem_WT_rep1
- GSM9009343 neural_BrainStem_WT_rep2
- GSM9009344 neural_BrainStem_WT_rep3
+ 41 more — browse all 81 samples with per-sample file links →
- GSE298418 MeCP2 stabilizes the glucocorticoid system in active chromatin regions [CUT&Tag] 63 samples shares mecp2, chromatin, regions, active
- GSE300507 Mecp2 stabilizes the glucocorticoid system in active chromatin regions 903 samples shares mecp2, chromatin, regions, active
- GSE295530 MeCP2 stabilizes the glucocorticoid system in active chromatin regions [RNA-seq] 723 samples shares mecp2, chromatin, regions, active
- GSE299346 Mecp2 stabilizes the glucocorticoid system in active chromatin regions [scRNA-Seq] 36 samples shares mecp2, chromatin, regions, active
- GSE42880 MeCP2 binds to 5hmC enriched within active genes and accessible chromatin in the nervous system 50 samples shares mecp2, chromatin, active
- GSE275329 MeCP2 Interacts with the Super Elongation Complex to Regulate Transcription (ChIP-Seq) 56 samples shares mecp2, acts
- GSE275333 MeCP2 Interacts with the Super Elongation Complex to Regulate Transcription 68 samples shares mecp2, acts
- GSE275332 MeCP2 Interacts with the Super Elongation Complex to Regulate Transcription (RNA-Seq) 12 samples shares mecp2, acts
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.