Genome-wide occupancy of PPARG and RXRA after treatment with PPARG inverse agonist
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 10 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 10 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE298628_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1270055 and SRA study SRP588916. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 10 more — browse all 10 samples with per-sample file links →
- GSE249941 ZNF292 genome-wide occupancy during cortical interneuron development 31 samples shares genome-wide, occupancy
- GSE244630 Global mapping of H3K27ac and RPB1 occupancy upon WNK463 treatment 12 samples shares occupancy, treatment
- GSE186311 Genome-wide changes in RNAPII occupancy, RNAPII phosphorylation, and transcription in response to CDK12/13 inhibition in gliomas 20 samples shares genome-wide, occupancy
- GSE300899 Extensive enhancer crosstalk governs the induction of PPARG2 expression during adipogenic lineage commitment [Chip-Seq] 76 samples shares pparg
- GSE278374 PPARG-centric transcriptional re-wiring during differentiation of human trophoblast stem cells into extravillous trophoblasts [ChIP-seq] 44 samples shares pparg
- GSE295569 PPARG-centric transcriptional re-wiring during differentiation of human trophoblast stem cells into extravillous trophoblasts [ChIP-seq] 15 samples shares pparg
- GSE300907 Extensive enhancer crosstalk governs the induction of PPARG2 expression during adipogenic lineage commitment 120 samples shares pparg
- GSE298581 Global gene expression response to PPARG inhibition in three urothelial cancer cell lines 48 samples shares pparg
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.