Synergistic effect of IL-33 priming and ATP stimulation in peritoneal cells derived mast cells
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Stromal Cell-Mast Cell Communication Orchestrates Anti-Viral Immunity in the MeningesAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE298699_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1270976 and SRA study SRP589453. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9021178 PCMCs, WT, No prime, NC stimulation, rep 1 PCMCs, WT, No prime, NC…
- GSM9021179 PCMCs, WT, No prime, NC stimulation, rep 2 PCMCs, WT, No prime, NC…
- GSM9021180 PCMCs, WT, No prime, NC stimulation, rep 3 PCMCs, WT, No prime, NC…
- GSM9021181 PCMCs, WT, IL-33 prime, NC stimulation, rep 1 PCMCs, WT, IL-33 prime,…
- GSM9021182 PCMCs, WT, IL-33 prime, NC stimulation, rep 2 PCMCs, WT, IL-33 prime,…
- GSM9021183 PCMCs, WT, IL-33 prime, NC stimulation, rep 3 PCMCs, WT, IL-33 prime,…
- GSM9021184 PCMCs, WT, No prime, ATP stimulation, rep 1 PCMCs, WT, No prime, AT…
- GSM9021185 PCMCs, WT, No prime, ATP stimulation, rep 2 PCMCs, WT, No prime, AT…
- GSM9021186 PCMCs, WT, No prime, ATP stimulation, rep 3 PCMCs, WT, No prime, AT…
- GSM9021187 PCMCs, WT, IL-33 prime, ATP stimulation, rep 1 PCMCs, WT, IL-33 prime,…
- GSM9021188 PCMCs, WT, IL-33 prime, ATP stimulation, rep 2 PCMCs, WT, IL-33 prime,…
- GSM9021189 PCMCs, WT, IL-33 prime, ATP stimulation, rep 3 PCMCs, WT, IL-33 prime,…
- GSM9021190 PCMCs, KO, IL-33 prime, NC stimulation, rep 1 PCMCs, KO, IL-33 prime,…
- GSM9021191 PCMCs, KO, IL-33 prime, NC stimulation, rep 2 PCMCs, KO, IL-33 prime,…
- GSM9021192 PCMCs, KO, IL-33 prime, NC stimulation, rep 3 PCMCs, KO, IL-33 prime,…
- GSM9021193 PCMCs, KO, IL-33 prime, ATP stimulation, rep 1 PCMCs, KO, IL-33 prime,…
- GSM9021194 PCMCs, KO, IL-33 prime, ATP stimulation, rep 2 PCMCs, KO, IL-33 prime,…
- GSM9021195 PCMCs, KO, IL-33 prime, ATP stimulation, rep 3 PCMCs, KO, IL-33 prime,…
- GSE279453 Bifidobacterium lactis Derived Vesicles Attenuates Hippocampal Neuroinflammation via Targeting IL-33 to Regulate FoxO6/P53 Signaling 15 samples shares il-33, derived
- GSE312715 Bone marrow derived macrophage response to CSF1R stimulation or starvation after deletion of Ptpn6 or Rraga 27 samples shares stimulation, derived
- GSE266938 Deletion of SWI/SNF ATPase activity in hepatocytes of adult liver disrupts circadian gene expression and central liver functions [RNAseq] 82 samples shares atp
- GSE279388 Inactivation of Atp7b copper transporter in the intestinal epithelial cells is associated with altered lipid processing and cell growth machinery that are independent from hepatic copper accumulation and liver histology severity 76 samples shares atp
- GSE313261 Global transcriptome analysis of IL-33, IL-25, IL-13, TSLP, IL-4, and IL-9 overexpression in mouse spleen 49 samples shares il-33
- GSE268774 Lymph node macrophages drive immune tolerance and resistance to cancer therapy by expression of the immune-regulatory cytokine IL-33 [RNA-seq] 48 samples shares il-33
- GSE279074 Comparative characterization of AHC associated mutations in ATP1A3 reveals diverse neurological alterations in mice. 48 samples shares atp
- GSE282861 The IL-33 and IL-4Rα blocking antibodies, itepekimab and dupilumab, modulate distinct and common inflammatory mediators in asthma - mouse data 43 samples shares il-33
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.