GEO series
Innate immunocompetent iNSpheroids:A hiPSC-derived 3D model to study the central nervous system captures an early CNS response to rAAV
GSE298806
Dependoparvovirus; Homo sapiens
Expression profiling by high throughput sequencing
6 samples
Submitted 2026/06/01
Platform GPL20301Platform GPL35910
Summary
Gene therapies using adeno-associated viruses (AAVs) for central nervous system (CNS) disorders face challenges due to host immune responses not represented in classical preclinical models. Here, we present a human-induced pluripotent stem cell (hiPSC)-derived innate immunocompetent 3D CNS model that recapitulates neuroinflammatory hallmarks, serving as a platform for preclinical gene therapy development. Utilizing various scales of stirred-tank bioreactor systems, we produced iNSpheroids composed of neurons, astrocytes, and oligodendrocytes, alongside microglial cells (iMGL) to mimic the neuro-immune axis. These systems enabled large-scale production of iNSpheroids and subsequent miniaturization for co-culture experiments and screening of inflammatory stimuli, while maintaining a highly controlled environment. The iMGL-iNSpheroids demonstrated active neuron-microglia crosstalk and exhibited distinct inflammatory responses to a series of neuroinflammatory factors. iMGL-iNSpheroids mounted a mild and transient response to rAAV9, mediated by the activation of inflammatory pathways (e.g., TNF-via NF-κB activation) in glial cell populations.. This model offers a valuable tool to dissect neuroinflammatory mechanisms, accelerating gene therapy development.
This dataset
Download
Direct links to NCBI, no account and no request form: the whole study as
GSE298806_RAW.tar, processed values as the series
matrix, the supplementary file directory, and per-sample
supplementary files for any of the 6 samples.
Raw sequencing reads are also available from ENA.
Also filed as
BioProject PRJNA1271341 and
SRA study SRP589698.
Searching any of these in the dataset finder brings you back here.
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative.
Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.