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Endothelial cell-conditioned medium enhanced astrocyte differentiation in cerebral organoids

GSE299777 Homo sapiens Expression profiling by high throughput sequencing 4 samples Submitted 2026/02/02 Platform GPL30173
Summary
Human brain organoids (hBOs) are self-organizing, three-dimensional structures that recapitulate aspects of early brain development, including astrogliogenesis. However, astrocyte differentiation does not occur until months into the differentiation process, and astrocytes continue to mature for years after that. Astrogliogenesis and astrocyte maturation could be further delayed by innate shortcomings of the model such as a lack of endothelial cells (ECs). Indeed, studies suggest that ECs or EC-derived factors promote astrogliogenesis and astrocyte maturation in vitro. Here, we exposed unguided hBOs to conditioned medium of immortalized human cerebral microvascular ECs (hCMEC/D3 cells) and determined their expression profile on the single-cell level at two time points. We found that EC-secreted proteins do not induce premature astrogliogenesis in hBOs but do affect hBO cellular composition and the maturation of radial glia, which are the precursors to astrocytes. These findings indicate the potential of EC-secreted factors to enhance astrocyte (precursor) maturation in hBOs and emphasize the importance of considering EC effects when aiming to accurately study developing astrocytes using hBOs.
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Direct links to NCBI, no account and no request form: the whole study as GSE299777_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1276489 and SRA study SRP591890. Searching any of these in the dataset finder brings you back here.

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