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Establishment of a human inner ear model for evaluating diminished ototoxicity of gentamicin subtype C2b

GSE299797 Homo sapiens Expression profiling by high throughput sequencing 4 samples Submitted 2026/06/13 Platform GPL30173
Summary
Clinically used gentamicin, a widely used aminoglycoside antibiotic, is a mixture of 5 major subtypes and potentially differential contributions to the drug’s known ototoxicity. The gentamicin subtype C2b has been previously associated with reduced ototoxicity in animal models, but its effects in humans remain uncertain due to the lack of appropriate in vitro models of the human inner ear. To address this gap, we generated otic progenitor cells (OPCs) from human induced pluripotent stem cells and rigorously characterized them using transcriptomic and immunocytochemical analyses to confirm their otic lineage identity and validate their relevance as a model for ototoxicity studies. We then compared the effects of gentamicin C2b and clinical gentamicin on cell viability and cytotoxicity in human OPCs. In parallel, we examined auditory function in mice following exposure to each formulation using auditory brainstem response and distortion product otoacoustic emissions. Gentamicin C2b exposure resulted in substantially lower cytotoxicity—via reduced mitochondria-dependent apoptosis—and higher cell viability in human OPCs, as well as dramatically attenuated hearing loss across all frequencies in mice. Together, these findings indicate that gentamicin C2b has reduced ototoxicity compared to clinically used preparations, supporting the need for further investigations in clinical settings.
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Direct links to NCBI, no account and no request form: the whole study as GSE299797_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1276543 and SRA study SRP591936. Searching any of these in the dataset finder brings you back here.

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