GEO series
Re-analysis of PRO-cap data from HCT116 cells (GSE219977)
GSE300325
Homo sapiens
Expression profiling by high throughput sequencing; Other; Third-party reanalysis
2026/03/09
Summary
This submission provides processed PRO-cap coverage tracks (bigWig files) from the re-analysis of public data (GSE219977, samples GSM6783554 and GSM6783555) from Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H. Data were aligned to the hg38 reference genome (GENCODE release 33; https://www.gencodegenes.org/human/release_33.html) and normalized using bamCoverage (PMID: 27079975). These processed files are intended for visualization and downstream analysis of nascent transcription.
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Paper (PMID 41780532) ↗
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