Endothelial PIEZO1 activation impairs osteogenesis via GREM1-mediated inhibition of BMP signaling
RNA-seq (gene expression) · human · 16 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 16 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE300885_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1282581 and SRA study SRP594848. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 16 sample titles: 16 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9071081 hBMEC treated with DMSO for 24h (Replicate 1)
- GSM9071082 hBMEC treated with DMSO for 24h (Replicate 2)
- GSM9071083 hBMEC treated with DMSO for 24h (Replicate 3)
- GSM9071084 hBMEC treated with DMSO for 24h (Replicate 4)
- GSM9071085 hBMEC treated with 10μM Yoda1 for 24h (Replicate 1)
- GSM9071086 hBMEC treated with 10μM Yoda1 for 24h (Replicate 2)
- GSM9071087 hBMEC treated with 10μM Yoda1 for 24h (Replicate 3)
- GSM9071088 hBMEC treated with 10μM Yoda1 for 24h (Replicate 4)
- GSM9071089 MC3T3-E1 treated with DMSO for 24h (Replicate 1)
- GSM9071090 MC3T3-E1 treated with DMSO for 24h (Replicate 2)
- GSM9071091 MC3T3-E1 treated with DMSO for 24h (Replicate 3)
- GSM9071092 MC3T3-E1 treated with DMSO for 24h (Replicate 4)
- GSM9071093 MC3T3-E1 treated with 10μM Yoda1 for 24h (Replicate 1)
- GSM9071094 MC3T3-E1 treated with 10μM Yoda1 for 24h (Replicate 2)
- GSM9071095 MC3T3-E1 treated with 10μM Yoda1 for 24h (Replicate 3)
- GSM9071096 MC3T3-E1 treated with 10μM Yoda1 for 24h (Replicate 4)
- GSE309462 Endothelial BMP6 Drives Hemodynamic-Dependent VSMCs Calcification in Carotid Atherosclerosis 14 samples shares bmp, endothelial
- GSE303466 CD24+ human dental papilla cells as translational seed cells for dentin-pulp regeneration via BMP2/SIRT1 metabolic axis 12 samples shares bmp
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.