GEO series

Digital gene expression and global mapping of polyadenylation sites with PolyA-Seq

GSE30198 Homo sapiens; Canis lupus familiaris; Mus musculus; Rattus norvegicus; Macaca mulatta Expression profiling by high throughput sequencing 26 samples Submitted 2011/06/25 Platform GPL11002Platform GPL10999Platform GPL13766Platform GPL10669Platform GPL13765

Summary

We describe PolyA-Seq, a strand-specific method for high-throughput sequencing of the 3' ends of polyadenylated transcripts. PolyA-Seq is as accurate for digital gene expression as existing RNA sequencing approaches, and superior to microarrays. We used the approach to map polyadenylation (polyA) sites in 24 samples from normal tissues in human, rhesus, dog, mouse, and rat.

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Direct links to NCBI, no account and no request form: the whole study as GSE30198_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 26 samples. Raw sequencing reads are also available from ENA.

Whole study · RAW.tar ↓ Series matrix ↓ All supplementary files ↗ Raw reads on ENA ↗

Also filed as BioProject PRJNA143955 and SRA study SRP007359. Searching any of these in the dataset finder brings you back here.

NCBI GEO page ↗ Paper (PMID 22454233) ↗

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