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SCFA producing capabilities of the gut microbiota enhance tumor-specific CD127+CD8+ T cell immunity against melanoma

GSE302231 Mus musculus Expression profiling by high throughput sequencing 4 samples Submitted 2025/11/06 Platform GPL30215
Summary
Gut microbiota modulate cancer control but how the different bacteria impact tumor-specific CD8+ T cell immunity remains unclear. Here, we identified that spontaneous control of cutaneous melanoma in mice correlated with microbiome-encoded metabolic pathways required for short-chain fatty acid (SCFA) synthesis. Diet-induced enforcement of microbial SCFA production reduced tumor progression and enriched tumor-specific CD8+ T cells in the tumor draining lymph node (tdLN) that lacked features of exhausted T cells. The SCFA butyrate promoted a FOXO1-dependent stemness program in these CD8+ T cells, enhanced the differentiation of CD127+CD8+ T cells and induced immune checkpoint blockade (ICB) responsiveness. Consistent with these experimental studies, metabolic modelling predicted enhanced microbial production of the SCFA butyrate in ICB-responsive melanoma patients and butyrate induced transcriptional features of ICB-responsiveness in CD8+ T cells. Collectively, these data identify the effects of microbial metabolic pathways on tumor-specific CD8+ T cell differentiation as critical components of how the gut microbiome regulates cancer immunity.
Published in
Microbiota-derived butyrate promotes a FOXO1-induced stemness program and preserves CD8(+) T cell immunity against melanoma
Bachem A, Clarke M, Kong G et al. · Immunity 2025 · PMID 41187761 · doi:10.1016/j.immuni.2025.10.004
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Also filed as BioProject PRJNA1289697 and SRA study SRP599919. Searching any of these in the dataset finder brings you back here.

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