Effect of AU-15330 treatment on Z138 gene expression profile
RNA-seq (gene expression) · human · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 3 × Z138_8h_AU-15330 vs 3 × Z138_24h_AU-15330 vs 3 × Z138_8h_DMSO vs 3 × Z138_24h_DMSOGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The SOX11:SMARCA4 complex is a driver of oncogenic transcriptional programs in mantle cell lymphomaBlood cancer journal · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE303024_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1293361 and SRA study SRP601802. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 4 replicated groups read from 12 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9116025 Z138_8h_AU-15330 Replicate 1 Z138_8h_AU-15330
- GSM9116026 Z138_8h_AU-15330 Replicate 2 Z138_8h_AU-15330
- GSM9116027 Z138_8h_AU-15330 Replicate 3 Z138_8h_AU-15330
- GSM9116028 Z138_24h_AU-15330 Replicate 1 Z138_24h_AU-15330
- GSM9116029 Z138_24h_AU-15330 Replicate 2 Z138_24h_AU-15330
- GSM9116030 Z138_24h_AU-15330 Replicate 3 Z138_24h_AU-15330
- GSM9116031 Z138_8h_DMSO Replicate 1 Z138_8h_DMSO
- GSM9116032 Z138_8h_DMSO Replicate 2 Z138_8h_DMSO
- GSM9116033 Z138_8h_DMSO Replicate 3 Z138_8h_DMSO
- GSM9116034 Z138_24h_DMSO Replicate 1 Z138_24h_DMSO
- GSM9116035 Z138_24h_DMSO Replicate 2 Z138_24h_DMSO
- GSM9116036 Z138_24h_DMSO Replicate 3 Z138_24h_DMSO
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.