RNA-seq of liver biopsies from patients with pediatric autoimmune liver disease
RNA-seq (gene expression) · human · 64 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 64 samples: 62 × AGMGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE303271_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1294730 and SRA study SRP602642. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 62 samples.
How we read this: 1 replicated groups read from 64 sample titles; they account for 62 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9122140 AGM100 AGM
- GSM9122141 AGM13 AGM
- GSM9122142 AGM132 AGM
- GSM9122143 AGM133 AGM
- GSM9122144 AGM135 AGM
- GSM9122145 AGM136 AGM
- GSM9122146 AGM14 AGM
- GSM9122147 AGM15 AGM
- GSM9122148 AGM154 AGM
- GSM9122149 AGM155 AGM
- GSM9122150 AGM156 AGM
- GSM9122151 AGM157 AGM
- GSM9122152 AGM158 AGM
- GSM9122153 AGM159 AGM
- GSM9122154 AGM16 AGM
- GSM9122155 AGM160 AGM
- GSM9122156 AGM161 AGM
- GSM9122157 AGM162 AGM
- GSM9122158 AGM163 AGM
- GSM9122159 AGM164 AGM
- GSM9122160 AGM166B
- GSM9122161 AGM167B
- GSM9122162 AGM168 AGM
- GSM9122163 AGM17 AGM
- GSM9122164 AGM170 AGM
- GSM9122165 AGM171 AGM
- GSM9122166 AGM172 AGM
- GSM9122167 AGM173 AGM
- GSM9122168 AGM174 AGM
- GSM9122169 AGM175 AGM
- GSM9122170 AGM176 AGM
- GSM9122171 AGM18 AGM
- GSM9122172 AGM19 AGM
- GSM9122173 AGM20 AGM
- GSM9122174 AGM21 AGM
- GSM9122175 AGM22 AGM
- GSM9122176 AGM23 AGM
- GSM9122177 AGM24 AGM
- GSM9122178 AGM246 AGM
- GSM9122179 AGM247 AGM
+ 24 more — browse all 64 samples with per-sample file links →
- GSE202379 Single Nuclei RNA-Seq to map progression of non-alcoholic fatty liver disease (NAFLD) in patients II 59 samples shares rna-seq, liver
- GSE210077 Single nuclei RNA-sequencing of normal and diseased liver 40 samples shares rna-seq, liver
- GSE303169 RNAseq analyses of Esophageal biopsies from proton pump inhibitor (PPI)-responsive and PPI-unresponsive Pediatric patients with Eosinophilic Esophagitis. 25 samples shares pediatric, biopsies
- GSE293805 Single nucleus RNA-sequencing atlas of pediatric solid tumors 182 samples shares pediatric, rna-seq
- GSE310058 Single-nucleus transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [snRNA-seq] 149 samples shares rna-seq
- GSE327289 Cerebrovascular Single-Nucleus RNA-Seq Reveals Heat Shock Activation and Vascular Remodeling in Alzheimer’s Disease and Primary Tauopathies 76 samples shares rna-seq
- GSE282444 Epigenetic Memory of Intestinal Epithelial Cells in Inflammatory Bowel Disease [RNA-seq] 56 samples shares rna-seq
- GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples shares rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.