Mechanism of maintenance and establishment of repression by the Mtg16 tumor suppressor [CUT&RUN, ChIP-Seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 92 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 92 samples: 92 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE303384_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1294979 and SRA study SRP602782. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 92 sample titles: 92 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9124871 MEL_Mtg16-FKBP_H3K27ac-ChIP_DMSO_A
- GSM9124872 MEL_Mtg16-FKBP_H3K27ac-ChIP_DMSO_B
- GSM9124873 MEL_Mtg16-FKBP_H3K27ac-ChIP_DMSO_C
- GSM9124874 MEL_Mtg16-FKBP_H3K27ac-ChIP_15m_A
- GSM9124875 MEL_Mtg16-FKBP_H3K27ac-ChIP_15m_B
- GSM9124876 MEL_Mtg16-FKBP_H3K27ac-ChIP_15m_C
- GSM9124877 MEL_Mtg16-FKBP_H3K27ac-ChIP_30m_A
- GSM9124878 MEL_Mtg16-FKBP_H3K27ac-ChIP_30m_B
- GSM9124879 MEL_Mtg16-FKBP_H3K27ac-ChIP_30m_C
- GSM9124880 MEL_Mtg16-FKBP_H3K27ac-ChIP_1h_A
- GSM9124881 MEL_Mtg16-FKBP_H3K27ac-ChIP_1h_B
- GSM9124882 MEL_Mtg16-FKBP_H3K27ac-ChIP_1h_C
- GSM9124883 MEL_Mtg16-FKBP_H3K27ac-ChIP_2h_A
- GSM9124884 MEL_Mtg16-FKBP_H3K27ac-ChIP_2h_B
- GSM9124885 MEL_Mtg16-FKBP_H3K27ac-ChIP_2h_C
- GSM9124886 MEL_Mtg16-FKBP_H3K27ac-ChIP_30mWO_A
- GSM9124887 MEL_Mtg16-FKBP_H3K27ac-ChIP_30mWO_B
- GSM9124888 MEL_Mtg16-FKBP_H3K27ac-ChIP_30mWO_C
- GSM9124889 MEL_Mtg16-FKBP_H3K27ac-ChIP_1hWO_A
- GSM9124890 MEL_Mtg16-FKBP_H3K27ac-ChIP_1hWO_B
- GSM9124891 MEL_Mtg16-FKBP_H3K27ac-ChIP_1hWO_C
- GSM9124892 MEL_Mtg16-FKBP_H3K27ac-ChIP_2hWO_A
- GSM9124893 MEL_Mtg16-FKBP_H3K27ac-ChIP_2hWO_B
- GSM9124894 MEL_Mtg16-FKBP_H3K27ac-ChIP_2hWO_C
- GSM9124895 MEL Mtg16 H3K4me1 DMSO A
- GSM9124896 MEL Mtg16 H3K4me1 DMSO B
- GSM9124897 MEL Mtg16 H3K4me1 DMSO C
- GSM9124898 MEL Mtg16 H3K4me1 dTAGV1 15m A
- GSM9124899 MEL Mtg16 H3K4me1 dTAGV1 15m B
- GSM9124900 MEL Mtg16 H3K4me1 dTAGV1 15m C
- GSM9124901 MEL Mtg16 H3K4me1 dTAGV1 30m A
- GSM9124902 MEL Mtg16H3K4me1 dTAGV1 30m B
- GSM9124903 MEL Mtg16 H3K4me1 dTAGV1 30m C
- GSM9124904 MEL Mtg16 H3K4me1 dTAGV1 1h A
- GSM9124905 MEL Mtg16 H3K4me1 dTAGV1 1h B
- GSM9124906 MEL Mtg16 H3K4me1 dTAGV1 1h C
- GSM9124907 MEL Mtg16 H3K4me1 dTAGV1 2h A
- GSM9124908 MEL Mtg16 H3K4me1 dTAGV1 2h B
- GSM9124909 MEL Mtg16 H3K4me1 dTAGV1 2h C
- GSM9124910 MEL Mtg16 H3K4me1 30mWO A
+ 52 more — browse all 92 samples with per-sample file links →
- GSE289642 Noncanonical PRC2 chromatin association reveals a key role of EZHIP in intergenerational epigenetic memory transition [ChIP-Seq, Cut & Run] 107 samples shares cut, run, chip-seq
- GSE306261 Astrocyte glucocorticoid receptor signaling restricts neuronal plasticity [CUT&RUN] 50 samples shares cut, run
- GSE313359 Hippocampal estrogen levels, receptor types and epigenetics contribute to sex-specific memory-vulnerabilities to concurrent acute stresses [Cut & Run] 45 samples shares cut, run
- GSE292333 H2AK119ub1-MLL2 counteraction underlies heritable H3K27me3 formation in oocytes [CATCH-seq and CUT&RUN] 44 samples shares cut, run
- GSE298002 Stage-specific Epigenetic Priming Amplifies Gene Activation During Lineage Commitment [CUT&Run] 38 samples shares cut, run
- GSE274875 A mutant ASXL1-EHMT complex contributes to heterochromatin dysfunction in clonal hematopoiesis and chronic monomyelocytic leukemia [Cut & Run] 38 samples shares cut, run
- GSE293129 Enhancer rewiring orchestrates inflammation and loss of cell identity during muscle stem cell aging [CUT&RUN] 36 samples shares cut, run
- GSE225202 REV-ERBα regulates regulatory T cell function in inflammatory bowel disease [CUT&RUN] 29 samples shares cut, run
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.