Genetic mapping identifies Homer1 as a developmental modifier of attention [scRNA-seq]
Single-cell RNA-seq · mouse · 10 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 10 samples: 8 distinct titles, 2 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Genetic mapping identifies Homer1 as a developmental modifier of attentionNature neuroscience · 2026
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE304383_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1301227 and SRA study SRP606266. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 3 samples read as cases, 3 as controls.
How we read this: Read from 10 sample titles: 8 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9149736 PFC CC025 Pooled Sample #1
- GSM9149737 PFC CC083 Pooled Sample #1
- GSM9149738 PFC CC025 Pooled Sample #2
- GSM9149739 PFC CC083 Pooled Sample #2
- GSM9149740 PFC Homer1a/Ania3 Developmental Knockdown Pooled Sample #1
- GSM9149741 PFC Scramble Control Pooled Sample #1
- GSM9149742 PFC Homer1a/Ania3 Developmental Knockdown Pooled Sample #2a
- GSM9149743 PFC Scramble Control Pooled Sample #2a
- GSM9149744 PFC Homer1a/Ania3 Developmental Knockdown Pooled Sample #2b
- GSM9149745 PFC Scramble Control Pooled Sample #2b
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Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.