RNA-seq of Epithelial cells treated with siRNA and irradiation or cytokine treatment
RNA-seq (gene expression) · human · 14 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 14 samples: 6 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- N-phenylquinazolin-4-amine-based EGFR TKIs suppress pulmonary fibrosis by modulating the EGFR/ERBB3 axis in epithelial-macrophage interactionCommunications biology · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE306184_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1309651 and SRA study SRP610730. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 12 samples.
How we read this: 6 replicated groups read from 14 sample titles; they account for 12 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM9194404 RNA seq of Epithelial cells treated with EGFR siRNA and cytokine_1 RNA seq of Epithelial c…
- GSM9194405 RNA seq of Epithelial cells treated with EGFR siRNA and cytokine_2 RNA seq of Epithelial c…
- GSM9194406 RNA seq of Epithelial cells treated with EGFR siRNA and irradiation_1 RNA seq of Epithelial c…
- GSM9194407 RNA seq of Epithelial cells treated with EGFR siRNA and irradiation_2 RNA seq of Epithelial c…
- GSM9194408 RNA seq of Epithelial celsl treated with Erbb3 siRNA and cytokine_1
- GSM9194409 RNA seq of Epithelial cells treated with Erbb3 siRNA and cytokine_2
- GSM9194410 RNA seq of Epithelial cells treated with Erbb3 siRNA and irradiation_1 RNA seq of Epithelial c…
- GSM9194411 RNA seq of Epithelial cells treated with Erbb3 siRNA and irradiation_2 RNA seq of Epithelial c…
- GSM9194412 RNA seq of Epithelial cells treated with control siRNA and cytokine_1 RNA seq of Epithelial c…
- GSM9194413 RNA seq of Epithelial cells treated with control siRNA and cytokine_2 RNA seq of Epithelial c…
- GSM9194414 RNA seq of Epithelial cells treated with control siRNA and irradiation_1 RNA seq of Epithelial c…
- GSM9194415 RNA seq of Epithelial cells treated with control siRNA and irradiation_2 RNA seq of Epithelial c…
- GSM9194416 RNA seq of Epithelial cells treated with control siRNA (Control)_1 RNA seq of Epithelial c…
- GSM9194417 RNA seq of Epithelial cells treated with control siRNA (Control)_2 RNA seq of Epithelial c…
- GSE275647 Role of Cancer-Associated Fibroblasts in Prognostic Stratification of Advanced-Stage Gastric Cancer through Interacting with Endothelial and Malignant Epithelial Cells [AGC RNA-seq] 216 samples shares epithelial, rna-seq
- GSE292059 Inflammatory Epithelial and Macrophage Pathways Underlie Residual Asthma Exacerbations in Urban Children Treated with Mepolizumab 965 samples shares epithelial, treated
- GSE282444 Epigenetic Memory of Intestinal Epithelial Cells in Inflammatory Bowel Disease [RNA-seq] 56 samples shares epithelial, rna-seq
- GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples shares treatment, rna-seq
- GSE278450 Glioblastoma scRNA-seq shows treatment-induced, immune-dependent increase in mesenchymal cancer cells and structural variants in distal neural stem cells 22 samples shares treatment, rna-seq
- GSE180948 RNA-Seq based transcriptome analysis of colorectal cancer cells in response to lactate treatment 12 samples shares treatment, rna-seq
- GSE275648 Role of Cancer-Associated Fibroblasts in Prognostic Stratification of Advanced-Stage Gastric Cancer through Interacting with Endothelial and Malignant Epithelial Cells [AGC scRNA-seq] 11 samples shares epithelial, rna-seq
- GSE288617 Paired transcriptomics reveals similarities between cytokine-stimulated organoids and ulcerative colitis epithelial responses 41 samples shares epithelial, cytokine
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.